Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202087..2202358 | Replicon | chromosome |
| Accession | NZ_CP100486 | ||
| Organism | Escherichia coli strain LH85-a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202217..2202320 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202087..2202358 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ16_RS10470 | 2198642..2199304 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NLZ16_RS10475 | 2199328..2199984 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NLZ16_RS10480 | 2200086..2200316 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NLZ16_RS10485 | 2200455..2200829 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NLZ16_RS10490 | 2200833..2201705 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| NLZ16_RS10495 | 2201718..2202059 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2202087..2202358 | - | 272 | - | - | Antitoxin |
| - | 2202217..2202320 | + | 104 | - | - | Toxin |
| NLZ16_RS10500 | 2202455..2203111 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| NLZ16_RS10505 | 2203112..2203303 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NLZ16_RS10510 | 2203408..2203644 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NLZ16_RS10515 | 2203762..2205201 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2194777..2218198 | 23421 | |
| - | inside | Prophage | - | - | 2178302..2218198 | 39896 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250617 NZ_CP100486:2202217-2202320 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT250617 NZ_CP100486:c2202358-2202087 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
