Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2172784..2172952 | Replicon | chromosome |
| Accession | NZ_CP100482 | ||
| Organism | Klebsiella grimontii strain LH87-a | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2172842..2172945 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2172784..2172952 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLZ17_RS10505 (NLZ17_10505) | 2167911..2169971 | + | 2061 | WP_098065722.1 | oligopeptidase B | - |
| NLZ17_RS10510 (NLZ17_10510) | 2169978..2170637 | - | 660 | WP_004134816.1 | exodeoxyribonuclease X | - |
| NLZ17_RS10515 (NLZ17_10515) | 2170716..2170946 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| NLZ17_RS10520 (NLZ17_10520) | 2171082..2171456 | + | 375 | WP_004134817.1 | CopC domain-containing protein YobA | - |
| NLZ17_RS10525 (NLZ17_10525) | 2171461..2172330 | + | 870 | WP_004134819.1 | copper homeostasis membrane protein CopD | - |
| NLZ17_RS10530 (NLZ17_10530) | 2172347..2172685 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2172784..2172952 | - | 169 | - | - | Antitoxin |
| - | 2172842..2172945 | + | 104 | - | - | Toxin |
| NLZ17_RS10535 (NLZ17_10535) | 2173070..2174029 | - | 960 | WP_049085573.1 | spore coat protein U domain-containing protein | - |
| NLZ17_RS10540 (NLZ17_10540) | 2174044..2176374 | - | 2331 | WP_098140854.1 | fimbria/pilus outer membrane usher protein | - |
| NLZ17_RS10545 (NLZ17_10545) | 2176377..2177141 | - | 765 | WP_004134823.1 | fimbria/pilus periplasmic chaperone | - |
| NLZ17_RS10550 (NLZ17_10550) | 2177160..2177678 | - | 519 | WP_032711055.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2101335..2182964 | 81629 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250601 NZ_CP100482:2172842-2172945 [Klebsiella grimontii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT250601 NZ_CP100482:c2172952-2172784 [Klebsiella grimontii]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGTGACAAAAGTG
GACGAATAA
