Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicA |
| Location | 4795228..4795639 | Replicon | chromosome |
| Accession | NZ_CP100475 | ||
| Organism | Mesorhizobium sp. C372A | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | X6KMY1 |
| Locus tag | NLY42_RS23025 | Protein ID | WP_023669047.1 |
| Coordinates | 4795228..4795428 (+) | Length | 67 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | X6KJU0 |
| Locus tag | NLY42_RS23030 | Protein ID | WP_023669048.1 |
| Coordinates | 4795433..4795639 (+) | Length | 69 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NLY42_RS23020 (NLY42_23010) | 4791457..4795221 | + | 3765 | WP_023754399.1 | vitamin B12-dependent ribonucleotide reductase | - |
| NLY42_RS23025 (NLY42_23015) | 4795228..4795428 | + | 201 | WP_023669047.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| NLY42_RS23030 (NLY42_23020) | 4795433..4795639 | + | 207 | WP_023669048.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| NLY42_RS23035 (NLY42_23025) | 4795663..4796268 | - | 606 | WP_245263524.1 | hypothetical protein | - |
| NLY42_RS23040 (NLY42_23030) | 4796273..4796809 | - | 537 | WP_245263523.1 | hypothetical protein | - |
| NLY42_RS23045 (NLY42_23035) | 4796823..4797518 | - | 696 | WP_245263522.1 | DUF3592 domain-containing protein | - |
| NLY42_RS23050 (NLY42_23040) | 4797558..4797794 | - | 237 | WP_245263521.1 | hypothetical protein | - |
| NLY42_RS23055 (NLY42_23045) | 4797958..4798899 | + | 942 | WP_023754396.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| NLY42_RS23060 (NLY42_23050) | 4798920..4799804 | - | 885 | WP_023669052.1 | DMT family transporter | - |
| NLY42_RS23065 (NLY42_23055) | 4799801..4800409 | - | 609 | WP_023669053.1 | class I SAM-dependent methyltransferase | - |
| NLY42_RS23070 (NLY42_23060) | 4800438..4800611 | - | 174 | WP_023669054.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4791457..4809058 | 17601 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|