Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relB-yefM/YoeB-RelB |
| Location | 1347406..1347916 | Replicon | chromosome |
| Accession | NZ_CP100390 | ||
| Organism | Alkalimarinus sp. A2M4 | ||
Toxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | NKI27_RS06075 | Protein ID | WP_265048791.1 |
| Coordinates | 1347653..1347916 (+) | Length | 88 a.a. |
Antitoxin (Protein)
| Gene name | yefM | Uniprot ID | - |
| Locus tag | NKI27_RS06070 | Protein ID | WP_265048790.1 |
| Coordinates | 1347406..1347660 (+) | Length | 85 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NKI27_RS06015 (NKI27_06015) | 1342442..1342657 | + | 216 | WP_265049560.1 | hypothetical protein | - |
| NKI27_RS06020 (NKI27_06020) | 1342768..1343013 | - | 246 | WP_265048780.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NKI27_RS06025 (NKI27_06025) | 1343003..1343251 | - | 249 | WP_265048781.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| NKI27_RS06030 (NKI27_06030) | 1343537..1343737 | + | 201 | WP_265048782.1 | hypothetical protein | - |
| NKI27_RS06035 (NKI27_06035) | 1343833..1344150 | - | 318 | WP_265048783.1 | CcdB family protein | - |
| NKI27_RS06040 (NKI27_06040) | 1344150..1344395 | - | 246 | WP_265048784.1 | type II toxin-antitoxin system CcdA family antitoxin | - |
| NKI27_RS06045 (NKI27_06045) | 1344585..1345019 | + | 435 | WP_265048785.1 | hypothetical protein | - |
| NKI27_RS06050 (NKI27_06050) | 1345174..1345440 | + | 267 | WP_265048786.1 | transcriptional regulator | - |
| NKI27_RS06055 (NKI27_06055) | 1345437..1345724 | + | 288 | WP_265048787.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NKI27_RS06060 (NKI27_06060) | 1345966..1346490 | + | 525 | WP_265048788.1 | HNH endonuclease | - |
| NKI27_RS06065 (NKI27_06065) | 1346612..1347160 | + | 549 | WP_265048789.1 | hypothetical protein | - |
| NKI27_RS06070 (NKI27_06070) | 1347406..1347660 | + | 255 | WP_265048790.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
| NKI27_RS06075 (NKI27_06075) | 1347653..1347916 | + | 264 | WP_265048791.1 | Txe/YoeB family addiction module toxin | Toxin |
| NKI27_RS06080 (NKI27_06080) | 1347980..1348645 | + | 666 | WP_265048792.1 | hypothetical protein | - |
| NKI27_RS06085 (NKI27_06085) | 1348714..1349589 | + | 876 | WP_265048793.1 | class A beta-lactamase | - |
| NKI27_RS06090 (NKI27_06090) | 1349655..1349957 | - | 303 | WP_265048794.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| NKI27_RS06095 (NKI27_06095) | 1349957..1350196 | - | 240 | WP_265048795.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| NKI27_RS06100 (NKI27_06100) | 1350297..1350506 | - | 210 | WP_265049474.1 | type II toxin-antitoxin system YafQ family toxin | - |
| NKI27_RS06105 (NKI27_06105) | 1350570..1350842 | - | 273 | WP_265048796.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| NKI27_RS06110 (NKI27_06110) | 1351081..1351362 | - | 282 | WP_265048797.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| NKI27_RS06115 (NKI27_06115) | 1351610..1351927 | + | 318 | WP_265048798.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | flank | IS/Tn | - | - | 1342259..1342480 | 221 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|