Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2845699..2845907 | Replicon | chromosome |
| Accession | NZ_CP100388 | ||
| Organism | Enterobacter hormaechei subsp. steigerwaltii strain VKH10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2845712..2845815 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2845699..2845907 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZ581_RS13440 (LZ581_13440) | 2841967..2843415 | + | 1449 | WP_196344545.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LZ581_RS13445 (LZ581_13445) | 2843522..2843761 | + | 240 | WP_003859885.1 | YebV family protein | - |
| LZ581_RS13450 (LZ581_13450) | 2843796..2844440 | - | 645 | Protein_2635 | protein-serine/threonine phosphatase | - |
| LZ581_RS13455 (LZ581_13455) | 2844608..2845588 | + | 981 | WP_017693251.1 | DUF535 family protein | - |
| LZ581_RS13460 (LZ581_13460) | 2845634..2845831 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2845699..2845907 | + | 209 | - | - | Antitoxin |
| - | 2845712..2845815 | - | 104 | - | - | Toxin |
| LZ581_RS13465 (LZ581_13465) | 2845956..2846294 | - | 339 | WP_003859787.1 | YebY family protein | - |
| LZ581_RS13470 (LZ581_13470) | 2846311..2847180 | - | 870 | WP_017384341.1 | copper homeostasis membrane protein CopD | - |
| LZ581_RS13475 (LZ581_13475) | 2847182..2847553 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| LZ581_RS13480 (LZ581_13480) | 2847691..2847921 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| LZ581_RS13485 (LZ581_13485) | 2848033..2848683 | + | 651 | WP_017693248.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LZ581_RS13490 (LZ581_13490) | 2848708..2849370 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2836597..2851427 | 14830 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T250502 NZ_CP100388:c2845815-2845712 [Enterobacter hormaechei subsp. steigerwaltii]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 209 bp
>AT250502 NZ_CP100388:2845699-2845907 [Enterobacter hormaechei subsp. steigerwaltii]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAACCGC
