Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-MazE
Location 2501996..2502591 Replicon chromosome
Accession NZ_CP100292
Organism Burkholderia glumae strain R2

Toxin (Protein)


Gene name chpB Uniprot ID -
Locus tag NIX97_RS27600 Protein ID WP_017425281.1
Coordinates 2502241..2502591 (+) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID -
Locus tag NIX97_RS27595 Protein ID WP_017425280.1
Coordinates 2501996..2502247 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NIX97_RS27565 2497270..2497755 + 486 WP_257758079.1 type II secretion system minor pseudopilin GspI -
NIX97_RS27570 2497739..2498146 - 408 WP_157384246.1 hypothetical protein -
NIX97_RS27580 2499188..2499993 + 806 WP_257757722.1 IS5 family transposase -
NIX97_RS27585 2500107..2500772 - 666 WP_257804045.1 hypothetical protein -
NIX97_RS27590 2501056..2501784 + 729 WP_257804046.1 IS6 family transposase -
NIX97_RS27595 2501996..2502247 + 252 WP_017425280.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
NIX97_RS27600 2502241..2502591 + 351 WP_017425281.1 type II toxin-antitoxin system ChpB family toxin Toxin
NIX97_RS27605 2502654..2502866 + 213 WP_236577911.1 hypothetical protein -
NIX97_RS27610 2502925..2503119 + 195 WP_159372711.1 hypothetical protein -
NIX97_RS27615 2503196..2503408 + 213 WP_017425283.1 hypothetical protein -
NIX97_RS27620 2503425..2503673 + 249 WP_017425284.1 hypothetical protein -
NIX97_RS27625 2503797..2504525 - 729 WP_159372712.1 IS6 family transposase -
NIX97_RS27630 2504870..2507224 - 2355 WP_257804048.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2497306..2521843 24537


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(7-116)

Antitoxin

Antitoxin PemI-like

(1-83)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12420.39 Da        Isoelectric Point: 8.6592

>T250388 WP_017425281.1 NZ_CP100292:2502241-2502591 [Burkholderia glumae]
MVKRVKFERGDIVRVSLNPTMGKEQQGDFRPALVLSPAAFNALGVALVAPITQGGEFARYAGFAVPLSGSGTETQGVALV
NMVRTLDLEARGARKIERAPVEVVEDALARLQTILE

Download         Length: 351 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 8812.98 Da        Isoelectric Point: 4.4645

>AT250388 WP_017425280.1 NZ_CP100292:2501996-2502247 [Burkholderia glumae]
MELKIQKWGNSAAVRLPAVLLEQIGASAGSSLNADVRPDGVLLTPARRKYSLDELVAQCDANAPEPADLAAWGEVNAVGR
EAW

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References