Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES(toxin)
Location 5042..5997 Replicon plasmid p19s1p
Accession NZ_CP100235
Organism Burkholderia glumae strain BGR19S

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag NIX15_RS29270 Protein ID WP_017924249.1
Coordinates 5464..5997 (+) Length 178 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag NIX15_RS29265 Protein ID WP_017924250.1
Coordinates 5042..5467 (+) Length 142 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NIX15_RS29245 101..1309 + 1209 WP_035977654.1 AAA family ATPase -
NIX15_RS29250 1306..2274 + 969 WP_035977658.1 ParB/RepB/Spo0J family partition protein -
NIX15_RS29255 3133..4179 - 1047 WP_173941289.1 hypothetical protein -
NIX15_RS29260 4719..4913 + 195 WP_173941288.1 hypothetical protein -
NIX15_RS29265 5042..5467 + 426 WP_017924250.1 DUF2384 domain-containing protein Antitoxin
NIX15_RS29270 5464..5997 + 534 WP_017924249.1 RES family NAD+ phosphorylase Toxin
NIX15_RS29275 6158..6355 + 198 WP_127840952.1 hypothetical protein -
NIX15_RS29280 6748..7032 + 285 WP_017432347.1 hypothetical protein -
NIX15_RS29285 7046..7288 + 243 WP_124837682.1 hypothetical protein -
NIX15_RS29290 7285..7530 + 246 WP_127913916.1 hypothetical protein -
NIX15_RS29295 7587..7928 + 342 WP_012732710.1 hypothetical protein -
NIX15_RS29300 7931..9766 + 1836 WP_257811932.1 site-specific integrase -
NIX15_RS29305 9869..10276 + 408 WP_254613402.1 hypothetical protein -
NIX15_RS29310 10539..10790 + 252 WP_012734108.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - fliC 1..225605 225605


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(11-168)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 178 a.a.        Molecular weight: 19131.69 Da        Isoelectric Point: 5.1753

>T250340 WP_017924249.1 NZ_CP100235:5464-5997 [Burkholderia glumae]
MILTPLQDITAYRMHVPKWAVAPTSGAGAARAGGRANRVGTPALYLALEVATAVAEYQQLSPLLPPGTLVSYRVTATPVV
DFTGGFRADLWPPLWESFFCDWRRDWFNARIEPPSWVLGDEAIAAGAKGILFRSTQATGGTNLVLFVDQLGEGDRLDVHD
PAGALPRDQASWDGPSR

Download         Length: 534 bp

Antitoxin


Download         Length: 142 a.a.        Molecular weight: 14935.78 Da        Isoelectric Point: 6.4664

>AT250340 WP_017924250.1 NZ_CP100235:5042-5467 [Burkholderia glumae]
MSTLAATRAPAAPAGGPAPASFDAFLSALREPDTAAPVLSARRYVAALNIDLQTLADQAHVHRNTVARAPQSASVQQFLR
EAIRVIRAATDLSGDVQRALFWYRNEPLAVFDYQTAETLVSAGRADDVVRYVASLEAGAAG

Download         Length: 426 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References