Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) chpSB/PRK09812-ChpS
Location 124863..125458 Replicon plasmid perw1rs1p
Accession NZ_CP100199
Organism Burkholderia glumae strain PERW1RS

Toxin (Protein)


Gene name chpB Uniprot ID C5AN78
Locus tag NIW82_RS31130 Protein ID WP_012734107.1
Coordinates 124863..125213 (-) Length 117 a.a.

Antitoxin (Protein)


Gene name chpS Uniprot ID C5AN79
Locus tag NIW82_RS31135 Protein ID WP_012734108.1
Coordinates 125207..125458 (-) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NIW82_RS31105 120085..120831 - 747 WP_232252306.1 energy transducer TonB -
NIW82_RS31110 120863..123238 - 2376 WP_232252305.1 TonB-dependent receptor -
NIW82_RS31115 123552..124016 - 465 WP_012734106.1 Lrp/AsnC family transcriptional regulator -
NIW82_RS31120 124239..124460 - 222 WP_017433768.1 hypothetical protein -
NIW82_RS31125 124610..124804 - 195 WP_124837685.1 hypothetical protein -
NIW82_RS31130 124863..125213 - 351 WP_012734107.1 type II toxin-antitoxin system ChpB family toxin Toxin
NIW82_RS31135 125207..125458 - 252 WP_012734108.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
NIW82_RS31140 125721..126128 - 408 WP_230674618.1 hypothetical protein -
NIW82_RS31145 126231..128066 - 1836 WP_012732711.1 site-specific integrase -
NIW82_RS31150 128069..128410 - 342 WP_012732710.1 hypothetical protein -
NIW82_RS31155 128467..128712 - 246 WP_127913916.1 hypothetical protein -
NIW82_RS31160 128709..128951 - 243 WP_124837682.1 hypothetical protein -
NIW82_RS31165 128965..129249 - 285 WP_017432347.1 hypothetical protein -
NIW82_RS31170 129637..129954 - 318 WP_148271069.1 hypothetical protein -
NIW82_RS31175 130138..130419 - 282 WP_043308454.1 type II toxin-antitoxin system RelE/ParE family toxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..132941 132941


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(8-114)

Antitoxin

Antitoxin PemI-like

(1-83)


Sequences

Toxin        


Download         Length: 117 a.a.        Molecular weight: 12389.37 Da        Isoelectric Point: 8.8909

>T250316 WP_012734107.1 NZ_CP100199:c125213-124863 [Burkholderia glumae]
MVKRVKFERGDIVRVSLSPTVGREQQGDFRPALVLSPAAFNALGVALVAPITQGGEFARFAGFAVPLSGSGTETQGVALV
NMVRMLDLEGRGARKIERAPVEVVEDALARLQTIIE

Download         Length: 351 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 8940.31 Da        Isoelectric Point: 6.2420

>AT250316 WP_012734108.1 NZ_CP100199:c125458-125207 [Burkholderia glumae]
MELKIQKWGNSAAVRLPSVLLEQINASVGGSLNADVRPDGVLLTPARRKYALDDLVAQCDTKAPVPADMAAWGEIKPVGR
EAW

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A246MF70

Antitoxin

Source ID Structure
AlphaFold DB A0A246MFN5

References