Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1935351..1935496 | Replicon | chromosome |
| Accession | NZ_CP100120 | ||
| Organism | Klebsiella pneumoniae strain GZKP13 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1935387..1935489 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1935351..1935496 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIK98_RS09500 | 1930481..1932541 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NIK98_RS09505 | 1932545..1933204 | - | 660 | WP_234283381.1 | exodeoxyribonuclease X | - |
| NIK98_RS09510 | 1933283..1933513 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NIK98_RS09515 | 1933626..1934000 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NIK98_RS09520 | 1934004..1934873 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NIK98_RS09525 | 1934890..1935228 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1935351..1935496 | - | 146 | - | - | Antitoxin |
| - | 1935387..1935489 | + | 103 | - | - | Toxin |
| NIK98_RS09530 | 1935865..1936008 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NIK98_RS09535 | 1936113..1937081 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NIK98_RS09540 | 1937238..1937891 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NIK98_RS09545 | 1937888..1938079 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NIK98_RS09550 | 1938177..1938416 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NIK98_RS09555 | 1938532..1939965 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T250239 NZ_CP100120:1935387-1935489 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT250239 NZ_CP100120:c1935496-1935351 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
