Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4904199..4904344 | Replicon | chromosome |
| Accession | NZ_CP100102 | ||
| Organism | Klebsiella pneumoniae strain HSKP33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4904235..4904337 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4904199..4904344 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIL14_RS23520 | 4899329..4901389 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NIL14_RS23525 | 4901393..4902052 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| NIL14_RS23530 | 4902131..4902361 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NIL14_RS23535 | 4902474..4902848 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NIL14_RS23540 | 4902852..4903721 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NIL14_RS23545 | 4903738..4904076 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4904199..4904344 | - | 146 | - | - | Antitoxin |
| - | 4904235..4904337 | + | 103 | - | - | Toxin |
| NIL14_RS23550 | 4904713..4904856 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NIL14_RS23555 | 4904961..4905929 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NIL14_RS23560 | 4906086..4906739 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NIL14_RS23565 | 4906736..4906927 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NIL14_RS23570 | 4907025..4907264 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NIL14_RS23575 | 4907380..4908813 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T250159 NZ_CP100102:4904235-4904337 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT250159 NZ_CP100102:c4904344-4904199 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
