Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1922726..1922871 | Replicon | chromosome |
| Accession | NZ_CP100076 | ||
| Organism | Klebsiella pneumoniae strain RJKP36 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1922762..1922864 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1922726..1922871 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIL00_RS09185 | 1917856..1919916 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NIL00_RS09190 | 1919920..1920579 | - | 660 | WP_020324964.1 | exodeoxyribonuclease X | - |
| NIL00_RS09195 | 1920658..1920888 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NIL00_RS09200 | 1921001..1921375 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NIL00_RS09205 | 1921379..1922248 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NIL00_RS09210 | 1922265..1922603 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1922726..1922871 | - | 146 | - | - | Antitoxin |
| - | 1922762..1922864 | + | 103 | - | - | Toxin |
| NIL00_RS09215 | 1923240..1923383 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NIL00_RS09220 | 1923488..1924456 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NIL00_RS09225 | 1924613..1925266 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NIL00_RS09230 | 1925263..1925454 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NIL00_RS09235 | 1925552..1925791 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NIL00_RS09240 | 1925907..1927340 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T250058 NZ_CP100076:1922762-1922864 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT250058 NZ_CP100076:c1922871-1922726 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
