Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) ykfI-yfjZ/CbtA-CbeA
Location 634478..635157 Replicon chromosome
Accession NZ_CP100076
Organism Klebsiella pneumoniae strain RJKP36

Toxin (Protein)


Gene name ykfI Uniprot ID A0A0C7K7A4
Locus tag NIL00_RS03090 Protein ID WP_020324801.1
Coordinates 634816..635157 (+) Length 114 a.a.

Antitoxin (Protein)


Gene name yfjZ Uniprot ID A0A0C7KEL2
Locus tag NIL00_RS03085 Protein ID WP_020324792.1
Coordinates 634478..634795 (+) Length 106 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NIL00_RS03060 (629692) 629692..632844 + 3153 WP_022631414.1 AIDA repeat-containing protein -
NIL00_RS03065 (632937) 632937..633176 + 240 WP_020324820.1 DUF905 domain-containing protein -
NIL00_RS03070 (633279) 633279..633737 + 459 WP_020324813.1 antirestriction protein -
NIL00_RS03075 (633753) 633753..634229 + 477 WP_020324797.1 RadC family protein -
NIL00_RS03080 (634238) 634238..634465 + 228 WP_020324796.1 DUF987 domain-containing protein -
NIL00_RS03085 (634478) 634478..634795 + 318 WP_020324792.1 type IV toxin-antitoxin system YeeU family antitoxin Antitoxin
NIL00_RS03090 (634816) 634816..635157 + 342 WP_020324801.1 TA system toxin CbtA family protein Toxin
NIL00_RS03095 (635273) 635273..636106 + 834 WP_020324805.1 DUF4942 domain-containing protein -
NIL00_RS03105 (636409) 636409..636915 + 507 WP_002917636.1 G/U mismatch-specific DNA glycosylase -
NIL00_RS03110 (637015) 637015..638856 - 1842 WP_004174339.1 RNA polymerase sigma factor RpoD -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - fimA / fimI / fimC / fimD / fimD / fimF / fimG 591624..636106 44482


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

CbtA toxin of type IV toxin-antitoxin system

(1-111)

Antitoxin

Antitoxin CbeA

(5-103)


Sequences

Toxin        


Download         Length: 114 a.a.        Molecular weight: 12818.91 Da        Isoelectric Point: 9.1484

>T250056 WP_020324801.1 NZ_CP100076:634816-635157 [Klebsiella pneumoniae]
MKTLPAIISRAAKPCLSPVAVWQMLLTRLLEKHYGLTLNDTPFCDETVIQEHIDAGITLADAVNFLVEKYGLVRIDRNGF
VWQEQSPYLRAVDILRARQATGLLRQSRNNAIR

Download         Length: 342 bp

Antitoxin


Download         Length: 106 a.a.        Molecular weight: 11915.51 Da        Isoelectric Point: 6.6246

>AT250056 WP_020324792.1 NZ_CP100076:634478-634795 [Klebsiella pneumoniae]
MSNITWGLQRDTTPRLGARLVQEGNQLHYLADRASMTGKFSDAECRKLDETFPHFISQMESMLITGEMNPRHAHCVTLYH
NGFTCEADTLGSCGYVYIAVYPIQR

Download         Length: 318 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A0C7K7A4

Antitoxin

Source ID Structure
AlphaFold DB A0A0C7KEL2

References