Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-yefM/YoeB-RelB
Location 1815580..1816096 Replicon chromosome
Accession NZ_CP099975
Organism Halomonas sp. Y3

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag NHL60_RS08645 Protein ID WP_253451455.1
Coordinates 1815833..1816096 (+) Length 88 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag NHL60_RS08640 Protein ID WP_253451453.1
Coordinates 1815580..1815840 (+) Length 87 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NHL60_RS08615 1811638..1812891 + 1254 WP_253451445.1 TIGR02679 family protein -
NHL60_RS08620 1812938..1814082 - 1145 Protein_1667 IS3 family transposase -
NHL60_RS08625 1814145..1814360 + 216 WP_253451447.1 hypothetical protein -
NHL60_RS08630 1814433..1814837 - 405 WP_253451449.1 DUF86 domain-containing protein -
NHL60_RS08635 1814857..1815258 - 402 WP_253451451.1 nucleotidyltransferase domain-containing protein -
NHL60_RS08640 1815580..1815840 + 261 WP_253451453.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NHL60_RS08645 1815833..1816096 + 264 WP_253451455.1 Txe/YoeB family addiction module toxin Toxin
NHL60_RS08650 1816279..1817868 + 1590 WP_253451457.1 ATP-binding protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(8-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10543.05 Da        Isoelectric Point: 9.4471

>T250017 WP_253451455.1 NZ_CP099975:1815833-1816096 [Halomonas sp. Y3]
MSNRLLCWTDESWRDYVYWQRQDKKTLKRINKLIADVKRSPFEGIGKPEPLKENLSGFWSRRIDESNRLVYVVEESSITI
LSCRYHY

Download         Length: 264 bp

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9697.89 Da        Isoelectric Point: 4.8053

>AT250017 WP_253451453.1 NZ_CP099975:1815580-1815840 [Halomonas sp. Y3]
MRVVSFTEARNGLKSVLDSVINDADTAIITRRDSEDAVVMSLDYYNSLMETVHLLRSPANAAHLNKSIEQYRSGKVVERK
LLDDDE

Download         Length: 261 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References