Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YoeB-YefM
Location 1207988..1208493 Replicon chromosome
Accession NZ_CP099975
Organism Halomonas sp. Y3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NHL60_RS05770 Protein ID WP_253450076.1
Coordinates 1207988..1208242 (-) Length 85 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NHL60_RS05775 Protein ID WP_253450079.1
Coordinates 1208239..1208493 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NHL60_RS05745 1203411..1204565 - 1155 WP_253450065.1 acetylornithine deacetylase -
NHL60_RS05750 1204640..1205611 + 972 Protein_1118 alkene reductase -
NHL60_RS05755 1205883..1206998 + 1116 WP_253450068.1 Fic family protein -
NHL60_RS05760 1207108..1207461 + 354 WP_253450071.1 hypothetical protein -
NHL60_RS05765 1207474..1207938 + 465 WP_253450073.1 hypothetical protein -
NHL60_RS05770 1207988..1208242 - 255 WP_253450076.1 Txe/YoeB family addiction module toxin Toxin
NHL60_RS05775 1208239..1208493 - 255 WP_253450079.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
NHL60_RS05780 1208607..1209185 - 579 WP_253450082.1 antibiotic biosynthesis monooxygenase -
NHL60_RS05785 1209465..1213001 + 3537 WP_253450085.1 AAA domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(1-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 85 a.a.        Molecular weight: 10213.75 Da        Isoelectric Point: 9.6406

>T250016 WP_253450076.1 NZ_CP099975:c1208242-1207988 [Halomonas sp. Y3]
MKLTFSEHAWEEYLYWQKADKKVLRRINQLIKEIQRTPFEGIGKPEPLKHGLAGYWSRRINDEHRLVYTINEDAVLIAQL
RYHY

Download         Length: 255 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9490.80 Da        Isoelectric Point: 4.4750

>AT250016 WP_253450079.1 NZ_CP099975:c1208493-1208239 [Halomonas sp. Y3]
MEAISYTAARSQLAQTMQQVCDDHAPLIITRSKAPSVVMISLEDYEALQETAYLLRSPKNARRLLESIAQLEERGGLERE
LIEE

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References