Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/-
Location 3037902..3038475 Replicon chromosome
Accession NZ_CP099965
Organism Halomonas sp. DN3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NKF27_RS13135 Protein ID WP_253552226.1
Coordinates 3038266..3038475 (+) Length 70 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NKF27_RS13130 Protein ID WP_253552224.1
Coordinates 3037902..3038231 (+) Length 110 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NKF27_RS13115 (NKF27_13115) 3033421..3034056 - 636 WP_253552218.1 hypothetical protein -
NKF27_RS13120 (NKF27_13120) 3034150..3036090 - 1941 WP_253552220.1 AAA family ATPase -
NKF27_RS13125 (NKF27_13125) 3036056..3036826 - 771 WP_253552222.1 DUF2971 domain-containing protein -
NKF27_RS13130 (NKF27_13130) 3037902..3038231 + 330 WP_253552224.1 damage-inducible protein J Antitoxin
NKF27_RS13135 (NKF27_13135) 3038266..3038475 + 210 WP_253552226.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NKF27_RS13140 (NKF27_13140) 3038676..3039356 - 681 WP_253552228.1 GntR family transcriptional regulator -
NKF27_RS13145 (NKF27_13145) 3039674..3041083 + 1410 WP_253552229.1 flagellar biosynthesis protein FlgA -
NKF27_RS13150 (NKF27_13150) 3041160..3042128 + 969 WP_045994607.1 tripartite tricarboxylate transporter substrate binding protein -
NKF27_RS13155 (NKF27_13155) 3042221..3042790 + 570 WP_253552231.1 tripartite tricarboxylate transporter TctB family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-65)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7716.09 Da        Isoelectric Point: 5.7468

>T249992 WP_253552226.1 NZ_CP099965:3038266-3038475 [Halomonas sp. DN3]
VVAERTDGQIEERAELLMLQPLLGVERQGIPGRLLILPEVSLLISYQLAGSDIRIMRVLHQKQQFPPAA

Download         Length: 210 bp

Antitoxin


Download         Length: 110 a.a.        Molecular weight: 12269.74 Da        Isoelectric Point: 9.2928

>AT249992 WP_253552224.1 NZ_CP099965:3037902-3038231 [Halomonas sp. DN3]
MDTRIQFRIDEETKRLAQQMAESQGRTLSGACRELAEQLAEQQRQATSHHDWLSLQVKRAFDGLEAGAATFVDHETAKSR
MAERKSRIRARDLAPVIGDSMGRRGSDKA

Download         Length: 330 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References