Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 541721..542204 Replicon chromosome
Accession NZ_CP099965
Organism Halomonas sp. DN3

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NKF27_RS02475 Protein ID WP_253555214.1
Coordinates 541721..542002 (-) Length 94 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NKF27_RS02480 Protein ID WP_253555216.1
Coordinates 541989..542204 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NKF27_RS02460 (NKF27_02460) 536845..538158 + 1314 WP_253556397.1 TonB-dependent receptor -
NKF27_RS02465 (NKF27_02465) 538523..540457 + 1935 WP_253555212.1 TonB-dependent receptor -
NKF27_RS02470 (NKF27_02470) 540505..541539 + 1035 WP_253555213.1 MBL fold metallo-hydrolase -
NKF27_RS02475 (NKF27_02475) 541721..542002 - 282 WP_253555214.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NKF27_RS02480 (NKF27_02480) 541989..542204 - 216 WP_253555216.1 stability determinant Antitoxin
NKF27_RS02485 (NKF27_02485) 542447..544081 - 1635 WP_253555218.1 ABC transporter ATP-binding protein -
NKF27_RS02490 (NKF27_02490) 544102..544986 - 885 WP_045991316.1 ABC transporter permease subunit -
NKF27_RS02495 (NKF27_02495) 544996..545922 - 927 WP_253555220.1 oligopeptide ABC transporter permease OppB -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 94 a.a.        Molecular weight: 10921.45 Da        Isoelectric Point: 8.4501

>T249990 WP_253555214.1 NZ_CP099965:c542002-541721 [Halomonas sp. DN3]
VTLIEWRPQARKALRDIIDYLSDRNPQAAETPLWSIEKTAEGLAQHPYLYRPGRVRGTREAVVHPNYLMVYHISNDRIVI
IDVLHSRQEYPKD

Download         Length: 282 bp

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 8349.02 Da        Isoelectric Point: 4.6413

>AT249990 WP_253555216.1 NZ_CP099965:c542204-541989 [Halomonas sp. DN3]
MSTPLDHEFETQEQVDSYDRWFRERVQRSLDDSRPSLAHDDVMSETRTLLESKRASNPTAPGVQERRRDAD

Download         Length: 216 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References