Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2015065..2015296 | Replicon | chromosome |
| Accession | NZ_CP099912 | ||
| Organism | Escherichia albertii strain 105_1_LWG_A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2015193..2015295 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2015065..2015296 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIY85_RS09750 | 2011615..2012277 | - | 663 | WP_025238865.1 | exodeoxyribonuclease X | - |
| NIY85_RS09755 | 2012301..2012957 | - | 657 | WP_025238866.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NIY85_RS09760 | 2013059..2013289 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIY85_RS09765 | 2013428..2013805 | + | 378 | WP_256876740.1 | CopC domain-containing protein YobA | - |
| NIY85_RS09770 | 2013809..2014681 | + | 873 | WP_025238867.1 | copper homeostasis membrane protein CopD | - |
| NIY85_RS09775 | 2014694..2015035 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2015065..2015296 | - | 232 | - | - | Antitoxin |
| - | 2015193..2015295 | + | 103 | - | - | Toxin |
| NIY85_RS09780 | 2015427..2016503 | - | 1077 | WP_256876741.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| NIY85_RS09785 | 2016469..2016750 | - | 282 | WP_001311878.1 | excisionase | - |
| NIY85_RS09790 | 2016857..2017045 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - | 2016861..2017039 | + | 179 | NuclAT_0 | - | - |
| - | 2016861..2017039 | + | 179 | NuclAT_0 | - | - |
| - | 2016861..2017039 | + | 179 | NuclAT_0 | - | - |
| - | 2016861..2017039 | + | 179 | NuclAT_0 | - | - |
| NIY85_RS09795 | 2017038..2017232 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| NIY85_RS09800 | 2017289..2018098 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2015427..2028265 | 12838 | |
| - | inside | Prophage | - | - | 1946108..2079226 | 133118 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249948 NZ_CP099912:2015193-2015295 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTATTCGGTCTTTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 232 bp
>AT249948 NZ_CP099912:c2015296-2015065 [Escherichia albertii]
TAAAAAAAGACCGAATACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAGT
AAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAGT
AAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
