Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 928860..929511 Replicon chromosome
Accession NZ_CP099895
Organism Escherichia albertii strain 153_2_TBG_A

Toxin (Protein)


Gene name cptA Uniprot ID B1EG01
Locus tag NIZ14_RS04545 Protein ID WP_000244763.1
Coordinates 929107..929511 (+) Length 135 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID S1PPB1
Locus tag NIZ14_RS04540 Protein ID WP_000354046.1
Coordinates 928860..929126 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NIZ14_RS04515 (924571) 924571..926004 - 1434 WP_059235410.1 6-phospho-beta-glucosidase BglA -
NIZ14_RS04520 (926049) 926049..926360 + 312 WP_001182957.1 N(4)-acetylcytidine aminohydrolase -
NIZ14_RS04525 (926528) 926528..927187 + 660 WP_000250281.1 hemolysin III family protein -
NIZ14_RS04530 (927628) 927628..928608 - 981 WP_059235393.1 tRNA-modifying protein YgfZ -
NIZ14_RS04535 (928640) 928640..928870 + 231 WP_000181267.1 hypothetical protein -
NIZ14_RS04540 (928860) 928860..929126 + 267 WP_000354046.1 FAD assembly factor SdhE Antitoxin
NIZ14_RS04545 (929107) 929107..929511 + 405 WP_000244763.1 protein YgfX Toxin
NIZ14_RS04550 (929550) 929550..930071 - 522 WP_059235395.1 flavodoxin FldB -
NIZ14_RS04555 (930183) 930183..931079 + 897 WP_059228147.1 site-specific tyrosine recombinase XerD -
NIZ14_RS04560 (931104) 931104..931814 + 711 WP_000748106.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
NIZ14_RS04565 (931820) 931820..933553 + 1734 WP_000813238.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 135 a.a.        Molecular weight: 15888.81 Da        Isoelectric Point: 11.1732

>T249795 WP_000244763.1 NZ_CP099895:929107-929511 [Escherichia albertii]
VVLWQSDLRVSWRAQWLSLLIHGLVAAAILLMPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVRAPWMIKTGMMLRLLSDSGKRQHLWLAADSMDEAEWRDLRRILLQQEIQ

Download         Length: 405 bp

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10547.12 Da        Isoelectric Point: 5.1599

>AT249795 WP_000354046.1 NZ_CP099895:928860-929126 [Escherichia albertii]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2S6P9B3

Antitoxin

Source ID Structure
PDB 6B58
PDB 1X6I
PDB 1X6J
PDB 6C12
AlphaFold DB A0A7U9QD57

References