Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2117147..2117379 | Replicon | chromosome |
| Accession | NZ_CP099892 | ||
| Organism | Escherichia albertii strain 155_2_TBG_A | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2117274..2117377 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2117147..2117379 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ16_RS10335 | 2114077..2114739 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| NIZ16_RS10340 | 2114763..2114975 | - | 213 | Protein_2016 | carbon-nitrogen hydrolase family protein | - |
| NIZ16_RS10345 | 2115141..2115371 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIZ16_RS10350 | 2115510..2115887 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| NIZ16_RS10355 | 2115891..2116763 | + | 873 | WP_059234872.1 | copper homeostasis membrane protein CopD | - |
| NIZ16_RS10360 | 2116776..2117117 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2117147..2117379 | - | 233 | - | - | Antitoxin |
| - | 2117274..2117377 | + | 104 | - | - | Toxin |
| NIZ16_RS10365 | 2119121..2119441 | + | 321 | WP_059242112.1 | hypothetical protein | - |
| NIZ16_RS10370 | 2119514..2120971 | + | 1458 | WP_059242110.1 | Trk system potassium transporter TrkG | - |
| NIZ16_RS10375 | 2121291..2122082 | - | 792 | WP_231932500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T249773 NZ_CP099892:2117274-2117377 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT249773 NZ_CP099892:c2117379-2117147 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
