Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3834245..3834477 | Replicon | chromosome |
| Accession | NZ_CP099890 | ||
| Organism | Escherichia albertii strain 205_2_TBG_B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3834372..3834475 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3834245..3834477 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ17_RS18915 | 3831175..3831837 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| NIZ17_RS18920 | 3831861..3832073 | - | 213 | Protein_3671 | carbon-nitrogen hydrolase family protein | - |
| NIZ17_RS18925 | 3832239..3832469 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIZ17_RS18930 | 3832608..3832985 | + | 378 | WP_256880088.1 | CopC domain-containing protein YobA | - |
| NIZ17_RS18935 | 3832989..3833861 | + | 873 | WP_256880089.1 | copper homeostasis membrane protein CopD | - |
| NIZ17_RS18940 | 3833874..3834215 | + | 342 | WP_256880090.1 | YebY family protein | - |
| - | 3834245..3834477 | - | 233 | - | - | Antitoxin |
| - | 3834372..3834475 | + | 104 | - | - | Toxin |
| NIZ17_RS18945 | 3835097..3835676 | + | 580 | Protein_3676 | bfpT-regulated chaperone | - |
| NIZ17_RS18950 | 3836133..3836297 | + | 165 | WP_157944741.1 | hypothetical protein | - |
| NIZ17_RS18955 | 3836869..3837189 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| NIZ17_RS18960 | 3837262..3838719 | + | 1458 | WP_059227268.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T249759 NZ_CP099890:3834372-3834475 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT249759 NZ_CP099890:c3834477-3834245 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCACGTCGACCACCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCACGTCGACCACCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
