Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2117296..2117528 | Replicon | chromosome |
| Accession | NZ_CP099887 | ||
| Organism | Escherichia albertii strain 208_2_GWG_B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2117423..2117526 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2117296..2117528 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ18_RS10335 | 2114226..2114888 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| NIZ18_RS10340 | 2114912..2115124 | - | 213 | Protein_2023 | carbon-nitrogen hydrolase family protein YobB | - |
| NIZ18_RS10345 | 2115290..2115520 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIZ18_RS10350 | 2115659..2116036 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| NIZ18_RS10355 | 2116040..2116912 | + | 873 | WP_059234872.1 | copper homeostasis membrane protein CopD | - |
| NIZ18_RS10360 | 2116925..2117266 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2117296..2117528 | - | 233 | - | - | Antitoxin |
| - | 2117423..2117526 | + | 104 | - | - | Toxin |
| NIZ18_RS10365 | 2119270..2119590 | + | 321 | WP_059242112.1 | hypothetical protein | - |
| NIZ18_RS10370 | 2119663..2121120 | + | 1458 | WP_059242110.1 | Trk system potassium transporter TrkG | - |
| NIZ18_RS10375 | 2121440..2122231 | - | 792 | WP_231932500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T249730 NZ_CP099887:2117423-2117526 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT249730 NZ_CP099887:c2117528-2117296 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
