Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3684416..3684648 | Replicon | chromosome |
| Accession | NZ_CP099886 | ||
| Organism | Escherichia albertii strain 222_1_EW_B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3684544..3684646 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3684416..3684648 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ19_RS18020 | 3681347..3682009 | - | 663 | WP_256877099.1 | exodeoxyribonuclease X | - |
| NIZ19_RS18025 | 3682033..3682245 | - | 213 | Protein_3493 | carbon-nitrogen hydrolase family protein | - |
| NIZ19_RS18030 | 3682410..3682640 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIZ19_RS18035 | 3682779..3683156 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| NIZ19_RS18040 | 3683160..3684032 | + | 873 | WP_059244199.1 | copper homeostasis membrane protein CopD | - |
| NIZ19_RS18045 | 3684045..3684386 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 3684416..3684648 | - | 233 | - | - | Antitoxin |
| - | 3684544..3684646 | + | 103 | - | - | Toxin |
| NIZ19_RS18050 | 3686391..3686711 | + | 321 | WP_000086028.1 | hypothetical protein | - |
| NIZ19_RS18055 | 3686784..3688241 | + | 1458 | WP_149449849.1 | Trk system potassium transporter TrkG | - |
| NIZ19_RS18060 | 3688860..3689594 | - | 735 | WP_000962058.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 3665573..3699380 | 33807 | |
| - | inside | Prophage | - | espJ | 3663535..3707002 | 43467 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249705 NZ_CP099886:3684544-3684646 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT249705 NZ_CP099886:c3684648-3684416 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
