Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2116885..2117117 | Replicon | chromosome |
| Accession | NZ_CP099877 | ||
| Organism | Escherichia albertii strain 247_2_EW_B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2117012..2117115 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2116885..2117117 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ22_RS10335 | 2113815..2114477 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| NIZ22_RS10340 | 2114501..2114713 | - | 213 | Protein_2016 | carbon-nitrogen hydrolase family protein | - |
| NIZ22_RS10345 | 2114879..2115109 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIZ22_RS10350 | 2115248..2115625 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| NIZ22_RS10355 | 2115629..2116501 | + | 873 | WP_059234872.1 | copper homeostasis membrane protein CopD | - |
| NIZ22_RS10360 | 2116514..2116855 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2116885..2117117 | - | 233 | - | - | Antitoxin |
| - | 2117012..2117115 | + | 104 | - | - | Toxin |
| NIZ22_RS10365 | 2118859..2119179 | + | 321 | WP_059242112.1 | hypothetical protein | - |
| NIZ22_RS10370 | 2119252..2120709 | + | 1458 | WP_059242110.1 | Trk system potassium transporter TrkG | - |
| NIZ22_RS10375 | 2121029..2121820 | - | 792 | WP_231932500.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T249620 NZ_CP099877:2117012-2117115 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT249620 NZ_CP099877:c2117117-2116885 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
