Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2041399..2041631 | Replicon | chromosome |
| Accession | NZ_CP099871 | ||
| Organism | Escherichia albertii strain 253_2_EW_B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2041527..2041629 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2041399..2041631 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ24_RS09880 | 2038329..2038991 | - | 663 | WP_000944293.1 | exodeoxyribonuclease X | - |
| NIZ24_RS09885 | 2039015..2039227 | - | 213 | Protein_1925 | carbon-nitrogen hydrolase family protein | - |
| NIZ24_RS09890 | 2039393..2039623 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIZ24_RS09895 | 2039762..2040139 | + | 378 | WP_151401036.1 | CopC domain-containing protein YobA | - |
| NIZ24_RS09900 | 2040143..2041015 | + | 873 | WP_256878322.1 | copper homeostasis membrane protein CopD | - |
| NIZ24_RS09905 | 2041028..2041369 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2041399..2041631 | - | 233 | - | - | Antitoxin |
| - | 2041527..2041629 | + | 103 | - | - | Toxin |
| NIZ24_RS09910 | 2043375..2043695 | + | 321 | WP_256878323.1 | hypothetical protein | - |
| NIZ24_RS09915 | 2043768..2045225 | + | 1458 | WP_149449849.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249571 NZ_CP099871:2041527-2041629 [Escherichia albertii]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT249571 NZ_CP099871:c2041631-2041399 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
