Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2105594..2105826 | Replicon | chromosome |
| Accession | NZ_CP099868 | ||
| Organism | Escherichia albertii strain 254_1_EW_B | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2105722..2105824 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2105594..2105826 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NIZ25_RS10215 | 2102525..2103187 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| NIZ25_RS10220 | 2103211..2103423 | - | 213 | Protein_1991 | carbon-nitrogen hydrolase family protein | - |
| NIZ25_RS10225 | 2103588..2103818 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| NIZ25_RS10230 | 2103957..2104334 | + | 378 | WP_000741562.1 | CopC domain-containing protein YobA | - |
| NIZ25_RS10235 | 2104338..2105210 | + | 873 | Protein_1994 | copper homeostasis membrane protein CopD | - |
| NIZ25_RS10240 | 2105223..2105564 | + | 342 | WP_000976487.1 | DUF2511 domain-containing protein | - |
| - | 2105594..2105826 | - | 233 | - | - | Antitoxin |
| - | 2105722..2105824 | + | 103 | - | - | Toxin |
| NIZ25_RS10245 | 2107569..2107889 | + | 321 | WP_054411012.1 | hypothetical protein | - |
| NIZ25_RS10250 | 2107962..2109419 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
| NIZ25_RS10255 | 2109739..2110530 | - | 792 | WP_233991624.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249542 NZ_CP099868:2105722-2105824 [Escherichia albertii]
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
GCAAGGCAACTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAACA
GGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT249542 NZ_CP099868:c2105826-2105594 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTCAGTTGCCTTGCTCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
