Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1858729..1858876 | Replicon | chromosome |
| Accession | NZ_CP099834 | ||
| Organism | Klebsiella quasipneumoniae strain Y7-3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1858770..1858872 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1858729..1858876 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDO72_RS08940 | 1853864..1855924 | + | 2061 | WP_048297811.1 | oligopeptidase B | - |
| NDO72_RS08945 | 1855928..1856587 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| NDO72_RS08950 | 1856666..1856896 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NDO72_RS08955 | 1857009..1857383 | + | 375 | WP_064154397.1 | CopC domain-containing protein YobA | - |
| NDO72_RS08960 | 1857387..1858256 | + | 870 | WP_064154398.1 | copper homeostasis membrane protein CopD | - |
| NDO72_RS08965 | 1858273..1858611 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1858729..1858876 | - | 148 | - | - | Antitoxin |
| - | 1858770..1858872 | + | 103 | - | - | Toxin |
| NDO72_RS08970 | 1859250..1859393 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| NDO72_RS08975 | 1859497..1860465 | - | 969 | WP_187142919.1 | VirK/YbjX family protein | - |
| NDO72_RS08980 | 1860622..1861275 | + | 654 | WP_101994712.1 | protein-serine/threonine phosphatase | - |
| NDO72_RS08985 | 1861272..1861463 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NDO72_RS08990 | 1861561..1861800 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NDO72_RS08995 | 1861916..1863346 | - | 1431 | WP_049013974.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249513 NZ_CP099834:1858770-1858872 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT249513 NZ_CP099834:c1858876-1858729 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
