Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2004691..2004837 | Replicon | chromosome |
| Accession | NZ_CP099811 | ||
| Organism | Yersinia ruckeri strain NVI-9681 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2004695..2004788 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2004691..2004837 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNQ37_RS09010 (LNQ37_009005) | 2000506..2001135 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LNQ37_RS09015 (LNQ37_009010) | 2001360..2002028 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| LNQ37_RS09020 (LNQ37_009015) | 2002769..2003914 | + | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| LNQ37_RS09025 (LNQ37_009020) | 2004178..2004609 | + | 432 | WP_248578078.1 | tyrosine-type recombinase/integrase | - |
| - | 2004691..2004837 | + | 147 | - | - | Antitoxin |
| - | 2004695..2004788 | - | 94 | - | - | Toxin |
| LNQ37_RS09030 (LNQ37_009025) | 2004947..2005288 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LNQ37_RS09035 (LNQ37_009030) | 2005383..2006267 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LNQ37_RS09040 (LNQ37_009035) | 2006269..2006655 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LNQ37_RS09045 (LNQ37_009040) | 2007061..2007576 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LNQ37_RS09050 (LNQ37_009045) | 2007979..2008209 | + | 231 | WP_038276017.1 | DNA polymerase III subunit theta | - |
| LNQ37_RS09055 (LNQ37_009050) | 2008332..2009282 | - | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T249486 NZ_CP099811:c2004788-2004695 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT249486 NZ_CP099811:2004691-2004837 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
