Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 931324..931947 Replicon chromosome
Accession NZ_CP099811
Organism Yersinia ruckeri strain NVI-9681

Toxin (Protein)


Gene name Hha Uniprot ID A0A085U5C4
Locus tag LNQ37_RS04190 Protein ID WP_038243726.1
Coordinates 931324..931527 (-) Length 68 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID A0A085U5C5
Locus tag LNQ37_RS04195 Protein ID WP_004718732.1
Coordinates 931579..931947 (-) Length 123 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LNQ37_RS04165 (LNQ37_004160) 927170..927508 + 339 WP_007886947.1 P-II family nitrogen regulator -
LNQ37_RS04170 (LNQ37_004165) 927547..928836 + 1290 WP_234055581.1 ammonium transporter AmtB -
LNQ37_RS04175 (LNQ37_004170) 928951..929814 - 864 WP_004718726.1 acyl-CoA thioesterase II -
LNQ37_RS04180 (LNQ37_004175) 930192..930506 - 315 WP_248577445.1 MGMT family protein -
LNQ37_RS04190 (LNQ37_004185) 931324..931527 - 204 WP_038243726.1 expression modulating protein YmoA Toxin
LNQ37_RS04195 (LNQ37_004190) 931579..931947 - 369 WP_004718732.1 Hha toxicity modulator TomB Antitoxin
LNQ37_RS04200 (LNQ37_004195) 932996..933157 + 162 WP_004718735.1 hypothetical protein -
LNQ37_RS04205 (LNQ37_004200) 933276..933419 - 144 WP_004718738.1 type B 50S ribosomal protein L36 -
LNQ37_RS04210 (LNQ37_004205) 933439..933693 - 255 WP_038243728.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(8-64)

Antitoxin

Biofilm formation regulator YbaJ

(1-117)


Sequences

Toxin        


Download         Length: 68 a.a.        Molecular weight: 8037.27 Da        Isoelectric Point: 6.4573

>T249484 WP_038243726.1 NZ_CP099811:c931527-931324 [Yersinia ruckeri]
MTKTDYLMRLRKCTTIDTLERVIEKNKYELSDDELELFYSAADHRLAELTMNKLYDKIPATVWQHVK

Download         Length: 204 bp

Antitoxin


Download         Length: 123 a.a.        Molecular weight: 14277.08 Da        Isoelectric Point: 4.4225

>AT249484 WP_004718732.1 NZ_CP099811:c931947-931579 [Yersinia ruckeri]
MDEYSPKRHDIAQLKFLCENLYDEGIATLGDSHHGWVNDPTSAVNLQLNDLIEHIASFVMSFKIKYADEIDLCELVEEYL
DDTYTLFSSYGINDPDLRRWQKTKDRLFRLFSGEYLCALMKN

Download         Length: 369 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A085U5C4

Antitoxin

Source ID Structure
AlphaFold DB A0A085U5C5

References