Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2060637..2060783 | Replicon | chromosome |
| Accession | NZ_CP099809 | ||
| Organism | Yersinia ruckeri strain NVI-10587 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2060641..2060734 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2060637..2060783 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNQ46_RS09320 (LNQ46_009315) | 2056443..2057072 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LNQ46_RS09325 (LNQ46_009320) | 2057297..2057965 | + | 669 | WP_233701006.1 | hypothetical protein | - |
| LNQ46_RS09330 (LNQ46_009325) | 2058706..2059851 | + | 1146 | WP_248578632.1 | YRC family class C beta-lactamase | - |
| LNQ46_RS09335 (LNQ46_009330) | 2059928..2060575 | + | 648 | WP_248578633.1 | tyrosine-type recombinase/integrase | - |
| - | 2060637..2060783 | + | 147 | - | - | Antitoxin |
| - | 2060641..2060734 | - | 94 | - | - | Toxin |
| LNQ46_RS09340 (LNQ46_009335) | 2060893..2061234 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LNQ46_RS09345 (LNQ46_009340) | 2061329..2062213 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LNQ46_RS09350 (LNQ46_009345) | 2062215..2062601 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LNQ46_RS09355 (LNQ46_009350) | 2063006..2063521 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LNQ46_RS09360 (LNQ46_009355) | 2063924..2064154 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LNQ46_RS09365 (LNQ46_009360) | 2064277..2065227 | - | 951 | WP_038243342.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T249477 NZ_CP099809:c2060734-2060641 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT249477 NZ_CP099809:2060637-2060783 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
