Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2076680..2076826 | Replicon | chromosome |
| Accession | NZ_CP099808 | ||
| Organism | Yersinia ruckeri strain NVI-11076 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2076684..2076777 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2076680..2076826 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LNQ41_RS09395 (LNQ41_009390) | 2072475..2073104 | + | 630 | WP_004721714.1 | hypothetical protein | - |
| LNQ41_RS09400 (LNQ41_009395) | 2073329..2073997 | + | 669 | WP_099511589.1 | hypothetical protein | - |
| LNQ41_RS09405 (LNQ41_009400) | 2074735..2075880 | + | 1146 | WP_038242735.1 | YRC family class C beta-lactamase | - |
| LNQ41_RS09410 (LNQ41_009405) | 2075999..2076607 | + | 609 | WP_248594021.1 | tyrosine-type recombinase/integrase | - |
| - | 2076680..2076826 | + | 147 | - | - | Antitoxin |
| - | 2076684..2076777 | - | 94 | - | - | Toxin |
| LNQ41_RS09415 (LNQ41_009410) | 2076936..2077277 | - | 342 | WP_004721721.1 | YebY family protein | - |
| LNQ41_RS09420 (LNQ41_009415) | 2077372..2078256 | - | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| LNQ41_RS09425 (LNQ41_009420) | 2078258..2078644 | - | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| LNQ41_RS09430 (LNQ41_009425) | 2079049..2079564 | - | 516 | WP_004721727.1 | non-heme ferritin | - |
| LNQ41_RS09435 (LNQ41_009430) | 2079967..2080197 | + | 231 | WP_038243344.1 | DNA polymerase III subunit theta | - |
| LNQ41_RS09440 (LNQ41_009435) | 2080320..2081270 | - | 951 | WP_038243342.1 | prolyl aminopeptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T249468 NZ_CP099808:c2076777-2076684 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT249468 NZ_CP099808:2076680-2076826 [Yersinia ruckeri]
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGATAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
