Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-RelB
Location 455761..456295 Replicon chromosome
Accession NZ_CP099805
Organism Yersinia ruckeri strain NVI-10705

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag LOR96_RS02080 Protein ID WP_071666901.1
Coordinates 456005..456295 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A1JJ37
Locus tag LOR96_RS02075 Protein ID WP_005175264.1
Coordinates 455761..456015 (+) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOR96_RS02065 (LOR96_002065) 452869..453813 - 945 WP_038275265.1 hypothetical protein -
LOR96_RS02070 (LOR96_002070) 454328..455587 + 1260 Protein_399 integrase arm-type DNA-binding domain-containing protein -
LOR96_RS02075 (LOR96_002075) 455761..456015 + 255 WP_005175264.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
LOR96_RS02080 (LOR96_002080) 456005..456295 + 291 WP_071666901.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
LOR96_RS02085 (LOR96_002085) 456559..456948 + 390 WP_096823270.1 restriction endonuclease subunit S -
LOR96_RS02090 (LOR96_002090) 457072..457647 + 576 WP_071706520.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -
LOR96_RS02095 (LOR96_002095) 457650..458306 + 657 WP_096823271.1 DUF4433 domain-containing protein -
LOR96_RS02100 (LOR96_002100) 458303..459370 + 1068 WP_096823272.1 macro domain-containing protein -
LOR96_RS02105 (LOR96_002105) 459391..459657 + 267 Protein_406 hypothetical protein -
LOR96_RS02110 (LOR96_002110) 459732..459866 + 135 Protein_407 transposase -
LOR96_RS02115 (LOR96_002115) 459869..460366 + 498 Protein_408 IS30-like element ISYkr1 family transposase -
LOR96_RS02120 (LOR96_002120) 460372..461065 + 694 Protein_409 IS3 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Prophage - - 446198..464455 18257


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-84)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(1-75)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11421.37 Da        Isoelectric Point: 9.9816

>T249453 WP_071666901.1 NZ_CP099805:456005-456295 [Yersinia ruckeri]
MTFNIDFDERALKEWHKLDKTIREQFKKKLRKLQENPYIESARLHGDLAGCFKIKLRASGFRLIYQVIDEEIVILIVAVG
KREDEKAYDLAKKRIQ

Download         Length: 291 bp

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9680.07 Da        Isoelectric Point: 4.8283

>AT249453 WP_005175264.1 NZ_CP099805:455761-456015 [Yersinia ruckeri]
MSTIQIRVDDELKKSAYQAFEKLNLSPSDALRLFLRYVAENEKLPFSEVSVMVSNQDEDADILAVVRERLKNPAKRIRVN
IDDL

Download         Length: 255 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A1JJ37

References