Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 256538..256809 | Replicon | chromosome |
| Accession | NZ_CP099752 | ||
| Organism | Escherichia coli strain 806883-11-2019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 256668..256771 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 256538..256809 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHF43_RS01290 | 253093..253755 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NHF43_RS01295 | 253779..254435 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NHF43_RS01300 | 254537..254767 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NHF43_RS01305 | 254906..255280 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| NHF43_RS01310 | 255284..256156 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| NHF43_RS01315 | 256169..256510 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 256538..256809 | - | 272 | - | - | Antitoxin |
| - | 256668..256771 | + | 104 | - | - | Toxin |
| NHF43_RS01320 | 256906..257562 | + | 657 | Protein_255 | protein-serine/threonine phosphatase | - |
| NHF43_RS01325 | 257563..257754 | - | 192 | WP_001296140.1 | YebW family protein | - |
| NHF43_RS01330 | 257859..258095 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NHF43_RS01335 | 258213..259652 | - | 1440 | WP_112013667.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T249396 NZ_CP099752:256668-256771 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT249396 NZ_CP099752:c256809-256538 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
