Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061521..2061691 | Replicon | chromosome |
| Accession | NC_014618 | ||
| Organism | Enterobacter lignolyticus SCF1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061582..2061685 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061521..2061691 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ENTCL_RS09715 | 2057963..2058622 | - | 660 | WP_013365942.1 | exodeoxyribonuclease X | - |
| ENTCL_RS09720 | 2058650..2059357 | - | 708 | WP_013365943.1 | carbon-nitrogen hydrolase family protein | - |
| ENTCL_RS09725 | 2059457..2059687 | - | 231 | WP_013365944.1 | DNA polymerase III subunit theta | - |
| ENTCL_RS09730 | 2059826..2060200 | + | 375 | WP_013365945.1 | CopC domain-containing protein YobA | - |
| ENTCL_RS09735 | 2060203..2061072 | + | 870 | WP_013365946.1 | copper homeostasis membrane protein CopD | - |
| ENTCL_RS09740 | 2061084..2061425 | + | 342 | WP_157865587.1 | YebY family protein | - |
| - | 2061521..2061691 | - | 171 | - | - | Antitoxin |
| - | 2061582..2061685 | + | 104 | - | - | Toxin |
| ENTCL_RS09745 | 2061981..2063561 | + | 1581 | WP_044611936.1 | cyclic diguanylate phosphodiesterase | - |
| ENTCL_RS09750 | 2063622..2063900 | - | 279 | WP_013365949.1 | DUF1471 domain-containing protein | - |
| ENTCL_RS23645 | 2064454..2064597 | - | 144 | WP_157865537.1 | Ecr family regulatory small membrane protein | - |
| ENTCL_RS09755 | 2064718..2065677 | - | 960 | WP_013365951.1 | VirK/YbjX family protein | - |
| ENTCL_RS09760 | 2065843..2066487 | + | 645 | WP_013365952.1 | protein-serine/threonine phosphatase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T24938 NC_014618:2061582-2061685 [[Enterobacter] lignolyticus SCF1]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 171 bp
>AT24938 NC_014618:c2061691-2061521 [[Enterobacter] lignolyticus SCF1]
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACCGCGCCAGGTTTTCCAGTCCGCTACAAAAGTGG
TCAGAAAAAAA
ACAAATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACCGCGCCAGGTTTTCCAGTCCGCTACAAAAGTGG
TCAGAAAAAAA
