Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1876010..1876155 | Replicon | chromosome |
| Accession | NZ_CP099743 | ||
| Organism | Klebsiella pneumoniae strain 503666-2-2019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1876046..1876148 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1876010..1876155 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHF44_RS09075 (NHF44_09070) | 1871140..1873200 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| NHF44_RS09080 (NHF44_09075) | 1873204..1873863 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| NHF44_RS09085 (NHF44_09080) | 1873942..1874172 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| NHF44_RS09090 (NHF44_09085) | 1874285..1874659 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| NHF44_RS09095 (NHF44_09090) | 1874663..1875532 | + | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| NHF44_RS09100 (NHF44_09095) | 1875549..1875887 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1876010..1876155 | - | 146 | - | - | Antitoxin |
| - | 1876046..1876148 | + | 103 | - | - | Toxin |
| NHF44_RS09105 (NHF44_09100) | 1876524..1876667 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| NHF44_RS09110 (NHF44_09105) | 1876772..1877740 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| NHF44_RS09115 (NHF44_09110) | 1877897..1878550 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| NHF44_RS09120 (NHF44_09115) | 1878547..1878738 | - | 192 | WP_002911395.1 | YebW family protein | - |
| NHF44_RS09125 (NHF44_09120) | 1878836..1879075 | - | 240 | WP_002911393.1 | YebV family protein | - |
| NHF44_RS09130 (NHF44_09125) | 1879191..1880624 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T249360 NZ_CP099743:1876046-1876148 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT249360 NZ_CP099743:c1876155-1876010 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
