Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 1721493..1722049 Replicon chromosome
Accession NZ_CP099735
Organism Photobacterium sp. TY1-4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NH461_RS24475 Protein ID WP_261603562.1
Coordinates 1721738..1722049 (+) Length 104 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NH461_RS24470 Protein ID WP_261603561.1
Coordinates 1721493..1721750 (+) Length 86 a.a.

Genomic Context

NH461_RS24440NH461_RS24465NH461_RS24470NH461_RS24475NH461_RS24485NH461_RS24490NH461_RS24495NH461_RS24445NH461_RS24450NH461_RS24455NH461_RS24460NH461_RS24480
Location: 1716696..1717214 (519 bp)
Type: Others
Protein ID: WP_261603555.1
Location: 1720284..1721258 (975 bp)
Type: Others
Protein ID: WP_261603560.1
Location: 1721493..1721750 (258 bp)
Type: Antitoxin
Protein ID: WP_261603561.1
Location: 1721738..1722049 (312 bp)
Type: Toxin
Protein ID: WP_261603562.1
Location: 1722782..1723711 (930 bp)
Type: Others
Protein ID: WP_261603563.1
Location: 1723967..1724419 (453 bp)
Type: Others
Protein ID: WP_261603564.1
Location: 1724495..1725748 (1254 bp)
Type: Others
Protein ID: WP_261603565.1
Location: 1717338..1717955 (618 bp)
Type: Others
Protein ID: WP_261603556.1
Location: 1717948..1718349 (402 bp)
Type: Others
Protein ID: WP_261603557.1
Location: 1718342..1718911 (570 bp)
Type: Others
Protein ID: WP_261603558.1
Location: 1718922..1720103 (1182 bp)
Type: Others
Protein ID: WP_261603559.1
Location: 1722152..1722562 (411 bp)
Type: Others
Protein ID: WP_261604628.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NH461_RS24440 (NH461_24370)1716696..1717214+519WP_261603555.1cysteine hydrolase family protein-
NH461_RS24445 (NH461_24375)1717338..1717955-618WP_261603556.1SCO family protein-
NH461_RS24450 (NH461_24380)1717948..1718349-402WP_261603557.1hypothetical protein-
NH461_RS24455 (NH461_24385)1718342..1718911-570WP_261603558.1hypothetical protein-
NH461_RS24460 (NH461_24390)1718922..1720103-1182WP_261603559.1MFS transporter-
NH461_RS24465 (NH461_24395)1720284..1721258+975WP_261603560.1LysR family transcriptional regulator-
NH461_RS24470 (NH461_24400)1721493..1721750+258WP_261603561.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
NH461_RS24475 (NH461_24405)1721738..1722049+312WP_261603562.1type II toxin-antitoxin system RelE/ParE family toxinToxin
NH461_RS24480 (NH461_24410)1722152..1722562-411WP_261604628.1VF530 family DNA-binding protein-
NH461_RS24485 (NH461_24415)1722782..1723711+930WP_261603563.1hypothetical protein-
NH461_RS24490 (NH461_24420)1723967..1724419+453WP_261603564.1TlpA disulfide reductase family protein-
NH461_RS24495 (NH461_24425)1724495..1725748+1254WP_261603565.1sialidase family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-91)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-68)


Sequences

Toxin        


Download         Length: 104 a.a.        Molecular weight: 11876.71 Da        Isoelectric Point: 4.8893

>T249355 WP_261603562.1 NZ_CP099735:1721738-1722049 [Photobacterium sp. TY1-4]
MAEVIWTDPALSDLNETAEYIALDNLVAAKLLVQSVFEKVERLELFPGSGRVPPELQHLSYREVVVSLCRVFYKQEGDKV
FILHVMREERDLRKFLLSQQSSP

Download         Length: 312 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9622.11 Da        Isoelectric Point: 6.7275

>AT249355 WP_261603561.1 NZ_CP099735:1721493-1721750 [Photobacterium sp. TY1-4]
MKVELVTSLKRQATKILADLHDSKEPVLITEHGKPSAYLVDVEDYEFMQNRLAMLEGIARGERAIAEGNVTPHSEAKEKM
SKWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References