Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/YafN(antitoxin)
Location 1309305..1309870 Replicon chromosome
Accession NZ_CP099734
Organism Photobacterium sp. TY1-4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NH461_RS06255 Protein ID WP_261602386.1
Coordinates 1309583..1309870 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NH461_RS06250 Protein ID WP_261602385.1
Coordinates 1309305..1309586 (+) Length 94 a.a.

Genomic Context

NH461_RS06220NH461_RS06230NH461_RS06250NH461_RS06255NH461_RS06225NH461_RS06235NH461_RS06240NH461_RS06245NH461_RS06260NH461_RS06265NH461_RS06270NH461_RS06275
Location: 1305328..1305705 (378 bp)
Type: Others
Protein ID: WP_261602382.1
Location: 1306363..1306788 (426 bp)
Type: Others
Protein ID: WP_261602383.1
Location: 1309305..1309586 (282 bp)
Type: Antitoxin
Protein ID: WP_261602385.1
Location: 1309583..1309870 (288 bp)
Type: Toxin
Protein ID: WP_261602386.1
Location: 1305947..1306259 (313 bp)
Type: Others
Protein ID: Protein_1135
Location: 1307009..1307298 (290 bp)
Type: Others
Protein ID: Protein_1137
Location: 1307422..1308633 (1212 bp)
Type: Others
Protein ID: WP_261602384.1
Location: 1308953..1309204 (252 bp)
Type: Others
Protein ID: Protein_1139
Location: 1309950..1310579 (630 bp)
Type: Others
Protein ID: WP_261602387.1
Location: 1310800..1312386 (1587 bp)
Type: Others
Protein ID: Protein_1143
Location: 1312383..1314026 (1644 bp)
Type: Others
Protein ID: WP_261602388.1
Location: 1314318..1314602 (285 bp)
Type: Others
Protein ID: WP_261602389.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
NH461_RS06220 (NH461_06210)1305328..1305705+378WP_261602382.1hypothetical protein-
NH461_RS06225 (NH461_06215)1305947..1306259-313Protein_1135IS110 family transposase-
NH461_RS06230 (NH461_06220)1306363..1306788+426WP_261602383.1GNAT family N-acetyltransferase-
NH461_RS06235 (NH461_06225)1307009..1307298-290Protein_1137IS110 family transposase-
NH461_RS06240 (NH461_06230)1307422..1308633-1212WP_261602384.1hypothetical protein-
NH461_RS06245 (NH461_06235)1308953..1309204-252Protein_1139transposase-
NH461_RS06250 (NH461_06240)1309305..1309586+282WP_261602385.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
NH461_RS06255 (NH461_06245)1309583..1309870+288WP_261602386.1type II toxin-antitoxin system RelE/ParE family toxinToxin
NH461_RS06260 (NH461_06250)1309950..1310579-630WP_261602387.1TetR/AcrR family transcriptional regulator-
NH461_RS06265 (NH461_06255)1310800..1312386-1587Protein_1143ABC transporter ATP-binding protein/permease-
NH461_RS06270 (NH461_06260)1312383..1314026-1644WP_261602388.1ABC transporter ATP-binding protein-
NH461_RS06275 (NH461_06265)1314318..1314602-285WP_261602389.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideGenomic island--1297697..131604618349


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-74)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 10904.53 Da        Isoelectric Point: 4.5950

>T249351 WP_261602386.1 NZ_CP099734:1309583-1309870 [Photobacterium sp. TY1-4]
MKVVWSPLALQKLGDAAEFISLDNPAAAGNWVNEVFDQTELLGTMPEMGRMVPEMPDTHYREIIFGHYRIIYSLSHEIRV
LTVRNCRQILTEDDV

Download         Length: 288 bp

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10427.00 Da        Isoelectric Point: 7.0163

>AT249351 WP_261602385.1 NZ_CP099734:1309305-1309586 [Photobacterium sp. TY1-4]
MSRIHFDKDIQPLSEFRASVASFIKQINETRRPLVITQRGKGVAVVLDVAEYEAMQEKIELLEEMRTAEAQLASGLGVSN
EDARAQVLGRIKK

Download         Length: 282 bp


Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References