Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relE-yefM/YoeB-YefM |
Location | 4838388..4838893 | Replicon | chromosome |
Accession | NZ_CP099608 | ||
Organism | Pseudomonas moraviensis strain OTU5BARRA1 |
Toxin (Protein)
Gene name | relE | Uniprot ID | A0A2U1R9I4 |
Locus tag | NF672_RS21355 | Protein ID | WP_042608353.1 |
Coordinates | 4838639..4838893 (+) | Length | 85 a.a. |
Antitoxin (Protein)
Gene name | yefM | Uniprot ID | A0A1N7ATY6 |
Locus tag | NF672_RS21350 | Protein ID | WP_042608352.1 |
Coordinates | 4838388..4838642 (+) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NF672_RS21325 (NF672_21325) | 4834070..4834399 | + | 330 | WP_042608348.1 | hypothetical protein | - |
NF672_RS21330 (NF672_21330) | 4834418..4834786 | - | 369 | WP_039761415.1 | PH domain-containing protein | - |
NF672_RS21335 (NF672_21335) | 4834950..4835321 | + | 372 | WP_065616631.1 | hypothetical protein | - |
NF672_RS21340 (NF672_21340) | 4835414..4836166 | + | 753 | WP_064364320.1 | hypothetical protein | - |
NF672_RS21345 (NF672_21345) | 4836237..4838156 | + | 1920 | WP_065616630.1 | alkaline phosphatase D family protein | - |
NF672_RS21350 (NF672_21350) | 4838388..4838642 | + | 255 | WP_042608352.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin |
NF672_RS21355 (NF672_21355) | 4838639..4838893 | + | 255 | WP_042608353.1 | Txe/YoeB family addiction module toxin | Toxin |
NF672_RS21360 (NF672_21360) | 4838887..4840074 | - | 1188 | WP_042608354.1 | aspartate aminotransferase family protein | - |
NF672_RS21365 (NF672_21365) | 4840177..4841097 | + | 921 | WP_042608355.1 | LysR family transcriptional regulator | - |
NF672_RS21370 (NF672_21370) | 4841137..4841541 | + | 405 | WP_252873336.1 | GNAT family N-acetyltransferase | - |
NF672_RS21375 (NF672_21375) | 4841675..4842376 | + | 702 | WP_064364315.1 | hypothetical protein | - |
NF672_RS21380 (NF672_21380) | 4842633..4843124 | - | 492 | WP_016773306.1 | RidA family protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2U1R9I4 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1N7ATY6 |