Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3374906..3375359 Replicon chromosome
Accession NZ_CP099608
Organism Pseudomonas moraviensis strain OTU5BARRA1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF672_RS14740 Protein ID WP_252874547.1
Coordinates 3375138..3375359 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID A0A2U1RCR7
Locus tag NF672_RS14735 Protein ID WP_042606822.1
Coordinates 3374906..3375100 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF672_RS14705 (NF672_14705) 3370137..3370964 + 828 WP_042606825.1 ABC transporter permease -
NF672_RS14710 (NF672_14710) 3370961..3371728 + 768 WP_064362793.1 phosphonate ABC transporter, permease protein PhnE -
NF672_RS14715 (NF672_14715) 3371907..3373586 + 1680 WP_252872919.1 MFS transporter -
NF672_RS14720 (NF672_14720) 3373695..3373913 + 219 WP_042606898.1 hypothetical protein -
NF672_RS14725 (NF672_14725) 3374145..3374339 + 195 WP_252872920.1 stability determinant -
NF672_RS14730 (NF672_14730) 3374302..3374613 + 312 WP_252872921.1 type II toxin-antitoxin system RelE/ParE family toxin -
NF672_RS14735 (NF672_14735) 3374906..3375100 + 195 WP_042606822.1 hypothetical protein Antitoxin
NF672_RS14740 (NF672_14740) 3375138..3375359 + 222 WP_252874547.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(35-67)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8431.81 Da        Isoelectric Point: 11.1199

>T249246 WP_252874547.1 NZ_CP099608:3375138-3375359 [Pseudomonas moraviensis]
IEYVEQRNTVASLALHQKLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYRVTDQINILTVLHARKKYP

Download         Length: 222 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7317.21 Da        Isoelectric Point: 4.5680

>AT249246 WP_042606822.1 NZ_CP099608:3374906-3375100 [Pseudomonas moraviensis]
MSAELSLIVSDFETEEEAASYDRWYRAKVQAALDDPRPPVPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure
AlphaFold DB A0A2U1RCR7

References