Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3290705..3291158 Replicon chromosome
Accession NZ_CP099602
Organism Pseudomonas siliginis strain OTU6MONTID1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF680_RS14685 Protein ID WP_252878180.1
Coordinates 3290937..3291158 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF680_RS14680 Protein ID WP_056789559.1
Coordinates 3290705..3290899 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF680_RS14655 (NF680_14655) 3285907..3286704 + 798 WP_252876410.1 ATP-binding cassette domain-containing protein -
NF680_RS14660 (NF680_14660) 3286698..3287525 + 828 WP_150635119.1 ABC transporter permease -
NF680_RS14665 (NF680_14665) 3287522..3288289 + 768 WP_016774956.1 phosphonate ABC transporter, permease protein PhnE -
NF680_RS14670 (NF680_14670) 3288468..3290147 + 1680 WP_252876411.1 MFS transporter -
NF680_RS14675 (NF680_14675) 3290256..3290474 + 219 WP_252876412.1 hypothetical protein -
NF680_RS14680 (NF680_14680) 3290705..3290899 + 195 WP_056789559.1 hypothetical protein Antitoxin
NF680_RS14685 (NF680_14685) 3290937..3291158 + 222 WP_252878180.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(35-67)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8440.82 Da        Isoelectric Point: 11.1199

>T249237 WP_252878180.1 NZ_CP099602:3290937-3291158 [Pseudomonas siliginis]
IEYVEQRNTVASVALHQRLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYQVTDHIKILTVLHARKKYP

Download         Length: 222 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7316.22 Da        Isoelectric Point: 4.2950

>AT249237 WP_056789559.1 NZ_CP099602:3290705-3290899 [Pseudomonas siliginis]
MSAELSLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References