Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 3290705..3291158 | Replicon | chromosome |
Accession | NZ_CP099602 | ||
Organism | Pseudomonas siliginis strain OTU6MONTID1 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | NF680_RS14685 | Protein ID | WP_252878180.1 |
Coordinates | 3290937..3291158 (+) | Length | 74 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | NF680_RS14680 | Protein ID | WP_056789559.1 |
Coordinates | 3290705..3290899 (+) | Length | 65 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NF680_RS14655 (NF680_14655) | 3285907..3286704 | + | 798 | WP_252876410.1 | ATP-binding cassette domain-containing protein | - |
NF680_RS14660 (NF680_14660) | 3286698..3287525 | + | 828 | WP_150635119.1 | ABC transporter permease | - |
NF680_RS14665 (NF680_14665) | 3287522..3288289 | + | 768 | WP_016774956.1 | phosphonate ABC transporter, permease protein PhnE | - |
NF680_RS14670 (NF680_14670) | 3288468..3290147 | + | 1680 | WP_252876411.1 | MFS transporter | - |
NF680_RS14675 (NF680_14675) | 3290256..3290474 | + | 219 | WP_252876412.1 | hypothetical protein | - |
NF680_RS14680 (NF680_14680) | 3290705..3290899 | + | 195 | WP_056789559.1 | hypothetical protein | Antitoxin |
NF680_RS14685 (NF680_14685) | 3290937..3291158 | + | 222 | WP_252878180.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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