Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | relBE/RelE(toxin) |
Location | 2251099..2251549 | Replicon | chromosome |
Accession | NZ_CP099602 | ||
Organism | Pseudomonas siliginis strain OTU6MONTID1 |
Toxin (Protein)
Gene name | relE | Uniprot ID | - |
Locus tag | NF680_RS09955 | Protein ID | WP_082228561.1 |
Coordinates | 2251099..2251368 (-) | Length | 90 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | NF680_RS09960 | Protein ID | WP_236169329.1 |
Coordinates | 2251358..2251549 (-) | Length | 64 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NF680_RS09935 (NF680_09935) | 2246695..2247318 | + | 624 | WP_016774080.1 | isochorismate family cysteine hydrolase YcaC | - |
NF680_RS09940 (NF680_09940) | 2247407..2248834 | - | 1428 | WP_041478581.1 | mechanosensitive ion channel family protein | - |
NF680_RS09945 (NF680_09945) | 2248943..2249965 | - | 1023 | WP_252877830.1 | alpha/beta hydrolase | - |
NF680_RS09950 (NF680_09950) | 2250126..2251025 | + | 900 | WP_041478583.1 | LysR family transcriptional regulator | - |
NF680_RS09955 (NF680_09955) | 2251099..2251368 | - | 270 | WP_082228561.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin |
NF680_RS09960 (NF680_09960) | 2251358..2251549 | - | 192 | WP_236169329.1 | antitoxin | Antitoxin |
NF680_RS09965 (NF680_09965) | 2251858..2252655 | + | 798 | WP_252877831.1 | class I SAM-dependent methyltransferase | - |
NF680_RS09970 (NF680_09970) | 2252782..2253474 | - | 693 | WP_041478587.1 | N-acetyltransferase | - |
NF680_RS09975 (NF680_09975) | 2253532..2254323 | - | 792 | WP_252877832.1 | ChbG/HpnK family deacetylase | - |
NF680_RS09980 (NF680_09980) | 2254295..2255482 | - | 1188 | WP_252877833.1 | GNAT family N-acetyltransferase | - |
NF680_RS09985 (NF680_09985) | 2255487..2256176 | - | 690 | WP_252877834.1 | N-acetyltransferase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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