Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2251099..2251549 Replicon chromosome
Accession NZ_CP099602
Organism Pseudomonas siliginis strain OTU6MONTID1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF680_RS09955 Protein ID WP_082228561.1
Coordinates 2251099..2251368 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF680_RS09960 Protein ID WP_236169329.1
Coordinates 2251358..2251549 (-) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF680_RS09935 (NF680_09935) 2246695..2247318 + 624 WP_016774080.1 isochorismate family cysteine hydrolase YcaC -
NF680_RS09940 (NF680_09940) 2247407..2248834 - 1428 WP_041478581.1 mechanosensitive ion channel family protein -
NF680_RS09945 (NF680_09945) 2248943..2249965 - 1023 WP_252877830.1 alpha/beta hydrolase -
NF680_RS09950 (NF680_09950) 2250126..2251025 + 900 WP_041478583.1 LysR family transcriptional regulator -
NF680_RS09955 (NF680_09955) 2251099..2251368 - 270 WP_082228561.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
NF680_RS09960 (NF680_09960) 2251358..2251549 - 192 WP_236169329.1 antitoxin Antitoxin
NF680_RS09965 (NF680_09965) 2251858..2252655 + 798 WP_252877831.1 class I SAM-dependent methyltransferase -
NF680_RS09970 (NF680_09970) 2252782..2253474 - 693 WP_041478587.1 N-acetyltransferase -
NF680_RS09975 (NF680_09975) 2253532..2254323 - 792 WP_252877832.1 ChbG/HpnK family deacetylase -
NF680_RS09980 (NF680_09980) 2254295..2255482 - 1188 WP_252877833.1 GNAT family N-acetyltransferase -
NF680_RS09985 (NF680_09985) 2255487..2256176 - 690 WP_252877834.1 N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10263.67 Da        Isoelectric Point: 7.3990

>T249235 WP_082228561.1 NZ_CP099602:c2251368-2251099 [Pseudomonas siliginis]
MQIEWRPEAKADLSNILRYIGERNFAAAVSLSKSIEESTTSLSVHPHLYRKGRSPGTREIVVHPNYVVIYEVTDRIEILS
VLHTRQEYP

Download         Length: 270 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7131.83 Da        Isoelectric Point: 4.7413

>AT249235 WP_236169329.1 NZ_CP099602:c2251549-2251358 [Pseudomonas siliginis]
MDGKIFPDDSGFENNEQAASHDRWLRAKVQASRDDPHPSLPHEDVMADMHALIESMRKKADAD

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References