Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3263594..3264047 Replicon chromosome
Accession NZ_CP099601
Organism Pseudomonas siliginis strain OTU6MONEA1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF679_RS14535 Protein ID WP_236708189.1
Coordinates 3263826..3264047 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF679_RS14530 Protein ID WP_056789559.1
Coordinates 3263594..3263788 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF679_RS14505 (NF679_14505) 3258796..3259593 + 798 WP_252867702.1 ATP-binding cassette domain-containing protein -
NF679_RS14510 (NF679_14510) 3259587..3260414 + 828 WP_024013147.1 ABC transporter permease -
NF679_RS14515 (NF679_14515) 3260411..3261178 + 768 WP_095180157.1 phosphonate ABC transporter, permease protein PhnE -
NF679_RS14520 (NF679_14520) 3261357..3263036 + 1680 WP_038861763.1 MFS transporter -
NF679_RS14525 (NF679_14525) 3263145..3263363 + 219 WP_016774958.1 hypothetical protein -
NF679_RS14530 (NF679_14530) 3263594..3263788 + 195 WP_056789559.1 hypothetical protein Antitoxin
NF679_RS14535 (NF679_14535) 3263826..3264047 + 222 WP_236708189.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-72)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8412.80 Da        Isoelectric Point: 10.9395

>T249228 WP_236708189.1 NZ_CP099601:3263826-3264047 [Pseudomonas siliginis]
IEYVEQRNTVASVALHQKLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYQVTDHIKILTVLHARKKYP

Download         Length: 222 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7316.22 Da        Isoelectric Point: 4.2950

>AT249228 WP_056789559.1 NZ_CP099601:3263594-3263788 [Pseudomonas siliginis]
MSAELSLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References