Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2192074..2192524 Replicon chromosome
Accession NZ_CP099601
Organism Pseudomonas siliginis strain OTU6MONEA1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF679_RS09645 Protein ID WP_082228561.1
Coordinates 2192074..2192343 (-) Length 90 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF679_RS09650 Protein ID WP_236169329.1
Coordinates 2192333..2192524 (-) Length 64 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF679_RS09625 (NF679_09625) 2187463..2188086 + 624 WP_016774080.1 isochorismate family cysteine hydrolase YcaC -
NF679_RS09630 (NF679_09630) 2188311..2189738 - 1428 WP_073474277.1 mechanosensitive ion channel family protein -
NF679_RS09635 (NF679_09635) 2189847..2190866 - 1020 WP_252869161.1 alpha/beta hydrolase -
NF679_RS09640 (NF679_09640) 2191102..2192001 + 900 WP_041478583.1 LysR family transcriptional regulator -
NF679_RS09645 (NF679_09645) 2192074..2192343 - 270 WP_082228561.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin
NF679_RS09650 (NF679_09650) 2192333..2192524 - 192 WP_236169329.1 antitoxin Antitoxin
NF679_RS09655 (NF679_09655) 2192833..2193630 + 798 WP_252869162.1 class I SAM-dependent methyltransferase -
NF679_RS09660 (NF679_09660) 2193757..2194449 - 693 WP_041478587.1 N-acetyltransferase -
NF679_RS09665 (NF679_09665) 2194507..2195298 - 792 WP_150635730.1 ChbG/HpnK family deacetylase -
NF679_RS09670 (NF679_09670) 2195270..2196457 - 1188 WP_150635729.1 GNAT family N-acetyltransferase -
NF679_RS09675 (NF679_09675) 2196462..2197151 - 690 WP_150635728.1 N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 90 a.a.        Molecular weight: 10263.67 Da        Isoelectric Point: 7.3990

>T249226 WP_082228561.1 NZ_CP099601:c2192343-2192074 [Pseudomonas siliginis]
MQIEWRPEAKADLSNILRYIGERNFAAAVSLSKSIEESTTSLSVHPHLYRKGRSPGTREIVVHPNYVVIYEVTDRIEILS
VLHTRQEYP

Download         Length: 270 bp

Antitoxin


Download         Length: 64 a.a.        Molecular weight: 7131.83 Da        Isoelectric Point: 4.7413

>AT249226 WP_236169329.1 NZ_CP099601:c2192524-2192333 [Pseudomonas siliginis]
MDGKIFPDDSGFENNEQAASHDRWLRAKVQASRDDPHPSLPHEDVMADMHALIESMRKKADAD

Download         Length: 192 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References