Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3258139..3258592 Replicon chromosome
Accession NZ_CP099600
Organism Pseudomonas siliginis strain OTU6MEDAA1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF678_RS14175 Protein ID WP_236708189.1
Coordinates 3258371..3258592 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF678_RS14170 Protein ID WP_056789559.1
Coordinates 3258139..3258333 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF678_RS14145 (NF678_14145) 3253341..3254138 + 798 WP_252878308.1 ATP-binding cassette domain-containing protein -
NF678_RS14150 (NF678_14150) 3254132..3254959 + 828 WP_252882142.1 ABC transporter permease -
NF678_RS14155 (NF678_14155) 3254956..3255723 + 768 WP_095180157.1 phosphonate ABC transporter, permease protein PhnE -
NF678_RS14160 (NF678_14160) 3255902..3257581 + 1680 WP_130901568.1 MFS transporter -
NF678_RS14165 (NF678_14165) 3257690..3257908 + 219 WP_056789562.1 hypothetical protein -
NF678_RS14170 (NF678_14170) 3258139..3258333 + 195 WP_056789559.1 hypothetical protein Antitoxin
NF678_RS14175 (NF678_14175) 3258371..3258592 + 222 WP_236708189.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-72)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8412.80 Da        Isoelectric Point: 10.9395

>T249218 WP_236708189.1 NZ_CP099600:3258371-3258592 [Pseudomonas siliginis]
IEYVEQRNTVASVALHQKLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYQVTDHIKILTVLHARKKYP

Download         Length: 222 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7316.22 Da        Isoelectric Point: 4.2950

>AT249218 WP_056789559.1 NZ_CP099600:3258139-3258333 [Pseudomonas siliginis]
MSAELSLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References