249211

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3304181..3304634 Replicon chromosome
Accession NZ_CP099599
Organism Pseudomonas siliginis strain OTU6ESPEB1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF677_RS14640 Protein ID WP_252878180.1
Coordinates 3304413..3304634 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF677_RS14635 Protein ID WP_056789559.1
Coordinates 3304181..3304375 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF677_RS14610 (NF677_14610) 3299383..3300180 + 798 WP_016774954.1 ATP-binding cassette domain-containing protein -
NF677_RS14615 (NF677_14615) 3300174..3301001 + 828 WP_252884319.1 ABC transporter permease -
NF677_RS14620 (NF677_14620) 3300998..3301765 + 768 WP_252884320.1 phosphonate ABC transporter, permease protein PhnE -
NF677_RS14625 (NF677_14625) 3301944..3303623 + 1680 WP_252884321.1 MFS transporter -
NF677_RS14630 (NF677_14630) 3303732..3303950 + 219 WP_056789562.1 hypothetical protein -
NF677_RS14635 (NF677_14635) 3304181..3304375 + 195 WP_056789559.1 hypothetical protein Antitoxin
NF677_RS14640 (NF677_14640) 3304413..3304634 + 222 WP_252878180.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(35-67)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8440.82 Da        Isoelectric Point: 11.1199

>T249211 WP_252878180.1 NZ_CP099599:3304413-3304634 [Pseudomonas siliginis]
IEYVEQRNTVASVALHQRLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYQVTDHIKILTVLHARKKYP

Download         Length: 222 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7316.22 Da        Isoelectric Point: 4.2950

>AT249211 WP_056789559.1 NZ_CP099599:3304181-3304375 [Pseudomonas siliginis]
MSAELSLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References