Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2284278..2284758 Replicon chromosome
Accession NZ_CP099599
Organism Pseudomonas siliginis strain OTU6ESPEB1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF677_RS10095 Protein ID WP_252885723.1
Coordinates 2284278..2284562 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF677_RS10100 Protein ID WP_123463680.1
Coordinates 2284552..2284758 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF677_RS10060 (NF677_10060) 2280154..2280627 + 474 WP_252885722.1 type II secretion system protein -
NF677_RS10065 (NF677_10065) 2280633..2281007 + 375 WP_122610261.1 type II secretion system protein -
NF677_RS10070 (NF677_10070) 2280982..2281521 + 540 WP_150741547.1 type II secretion system protein -
NF677_RS10075 (NF677_10075) 2281518..2281910 + 393 WP_038364891.1 curli production assembly/transport protein CsgE -
NF677_RS10080 (NF677_10080) 2281907..2282338 + 432 WP_122610259.1 curli assembly protein CsgF -
NF677_RS10085 (NF677_10085) 2282368..2283228 + 861 WP_150741549.1 CsgG/HfaB family protein -
NF677_RS10090 (NF677_10090) 2283734..2284104 + 371 Protein_1982 DUF6124 family protein -
NF677_RS10095 (NF677_10095) 2284278..2284562 - 285 WP_252885723.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NF677_RS10100 (NF677_10100) 2284552..2284758 - 207 WP_123463680.1 antitoxin Antitoxin
NF677_RS10105 (NF677_10105) 2285035..2286486 - 1452 WP_252885724.1 curlin -
NF677_RS10110 (NF677_10110) 2286514..2286978 - 465 WP_150741552.1 curlin -
NF677_RS10115 (NF677_10115) 2287050..2289278 - 2229 WP_150741553.1 Ig-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10851.68 Da        Isoelectric Point: 10.5014

>T249210 WP_252885723.1 NZ_CP099599:c2284562-2284278 [Pseudomonas siliginis]
MQIKWRPKARVELSKILKYIGERNFEAATALHKSVVKATSALCWLPHLYRKGRSPGTREIVVSPNYLVVYQVADHIEIVS
ILHARQEYPRRDPG

Download         Length: 285 bp

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7690.57 Da        Isoelectric Point: 3.8068

>AT249210 WP_123463680.1 NZ_CP099599:c2284758-2284552 [Pseudomonas siliginis]
MIDPSLIDPLCPVVSDLDPEEQAASYDRWFRAEVQASLDDPRPSIPHEQVMEEMNALMESMRKSADAD

Download         Length: 207 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References