Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 3284808..3285261 Replicon chromosome
Accession NZ_CP099598
Organism Pseudomonas siliginis strain OTU6BANIB1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF676_RS15125 Protein ID WP_236708189.1
Coordinates 3285040..3285261 (+) Length 74 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF676_RS15120 Protein ID WP_056789559.1
Coordinates 3284808..3285002 (+) Length 65 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF676_RS15095 (NF676_15095) 3280010..3280807 + 798 WP_056789573.1 ATP-binding cassette domain-containing protein -
NF676_RS15100 (NF676_15100) 3280801..3281628 + 828 WP_150635119.1 ABC transporter permease -
NF676_RS15105 (NF676_15105) 3281625..3282392 + 768 WP_252886311.1 phosphonate ABC transporter, permease protein PhnE -
NF676_RS15110 (NF676_15110) 3282571..3284250 + 1680 WP_252884321.1 MFS transporter -
NF676_RS15115 (NF676_15115) 3284359..3284577 + 219 WP_056789562.1 hypothetical protein -
NF676_RS15120 (NF676_15120) 3284808..3285002 + 195 WP_056789559.1 hypothetical protein Antitoxin
NF676_RS15125 (NF676_15125) 3285040..3285261 + 222 WP_236708189.1 type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family Toxin

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(2-72)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 74 a.a.        Molecular weight: 8412.80 Da        Isoelectric Point: 10.9395

>T249205 WP_236708189.1 NZ_CP099598:3285040-3285261 [Pseudomonas siliginis]
IEYVEQRNTVASVALHQKLSAAARRLSWIPHGFRSGRIPGTREMVINSNYLLVYQVTDHIKILTVLHARKKYP

Download         Length: 222 bp

Antitoxin


Download         Length: 65 a.a.        Molecular weight: 7316.22 Da        Isoelectric Point: 4.2950

>AT249205 WP_056789559.1 NZ_CP099598:3284808-3285002 [Pseudomonas siliginis]
MSAELSLIVSDFETEEEAADYDLWYRAKVQAALDDPRPPIPHDEAMVLLGQMLEERRKNRRAAG

Download         Length: 195 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References