Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE(toxin)
Location 2317084..2317564 Replicon chromosome
Accession NZ_CP099596
Organism Pseudomonas siliginis strain OTU6BAGNBB1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag NF675_RS10150 Protein ID WP_252879826.1
Coordinates 2317084..2317368 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag NF675_RS10155 Protein ID WP_123463680.1
Coordinates 2317358..2317564 (-) Length 69 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NF675_RS10115 (NF675_10115) 2312943..2313416 + 474 WP_122700552.1 type II secretion system protein -
NF675_RS10120 (NF675_10120) 2313422..2313796 + 375 WP_122610261.1 type II secretion system protein -
NF675_RS10125 (NF675_10125) 2313771..2314310 + 540 WP_150741547.1 type II secretion system protein -
NF675_RS10130 (NF675_10130) 2314307..2314699 + 393 WP_038364891.1 curli production assembly/transport protein CsgE -
NF675_RS10135 (NF675_10135) 2314696..2315127 + 432 WP_122610259.1 curli assembly protein CsgF -
NF675_RS10140 (NF675_10140) 2315157..2316017 + 861 WP_150741549.1 CsgG/HfaB family protein -
NF675_RS10145 (NF675_10145) 2316539..2316910 + 372 WP_150741550.1 DUF6124 family protein -
NF675_RS10150 (NF675_10150) 2317084..2317368 - 285 WP_252879826.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
NF675_RS10155 (NF675_10155) 2317358..2317564 - 207 WP_123463680.1 antitoxin Antitoxin
NF675_RS10160 (NF675_10160) 2317841..2319292 - 1452 WP_252879827.1 curlin -
NF675_RS10165 (NF675_10165) 2319320..2319784 - 465 WP_150741552.1 curlin -
NF675_RS10170 (NF675_10170) 2319856..2322084 - 2229 WP_252879828.1 Ig-like domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-88)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 10875.66 Da        Isoelectric Point: 10.5014

>T249196 WP_252879826.1 NZ_CP099596:c2317368-2317084 [Pseudomonas siliginis]
MQIKWRPKARVELSKILKYIGERNFEAATALHKSVVKATSALCWHPHLYRKGRSPGTREIVVSPNYLVVYQVADHIEIVS
ILHARQEYPRRDPG

Download         Length: 285 bp

Antitoxin


Download         Length: 69 a.a.        Molecular weight: 7690.57 Da        Isoelectric Point: 3.8068

>AT249196 WP_123463680.1 NZ_CP099596:c2317564-2317358 [Pseudomonas siliginis]
MIDPSLIDPLCPVVSDLDPEEQAASYDRWFRAEVQASLDDPRPSIPHEQVMEEMNALMESMRKSADAD

Download         Length: 207 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References