Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1952931..1953202 Replicon chromosome
Accession NZ_CP099590
Organism Escherichia coli strain WG1

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1953061..1953164 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1952931..1953202 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NHF37_RS09335 1949486..1950148 - 663 WP_000944256.1 exodeoxyribonuclease X -
NHF37_RS09340 1950172..1950828 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein YobB -
NHF37_RS09345 1950930..1951160 - 231 WP_000916763.1 DNA polymerase III subunit theta -
NHF37_RS09350 1951299..1951673 + 375 WP_000168747.1 CopC domain-containing protein YobA -
NHF37_RS09355 1951677..1952549 + 873 WP_000879289.1 copper homeostasis membrane protein CopD -
NHF37_RS09360 1952562..1952903 + 342 WP_000976476.1 YebY family protein -
- 1952931..1953202 - 272 - - Antitoxin
- 1953061..1953164 + 104 - - Toxin
NHF37_RS09365 1953299..1953955 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
NHF37_RS09370 1953956..1954147 - 192 WP_000457842.1 YebW family protein -
NHF37_RS09375 1954252..1954488 - 237 WP_001295499.1 YebV family protein -
NHF37_RS09380 1954606..1956045 - 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T249172 NZ_CP099590:1953061-1953164 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT249172 NZ_CP099590:c1953202-1952931 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References