Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1945582..1945853 | Replicon | chromosome |
| Accession | NZ_CP099588 | ||
| Organism | Escherichia coli strain EMG2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1945712..1945815 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1945582..1945853 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NHF38_RS09290 | 1942137..1942799 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| NHF38_RS09295 | 1942823..1943479 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| NHF38_RS09300 | 1943581..1943811 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| NHF38_RS09305 | 1943950..1944324 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| NHF38_RS09310 | 1944328..1945200 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| NHF38_RS09315 | 1945213..1945554 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1945582..1945853 | - | 272 | - | - | Antitoxin |
| - | 1945712..1945815 | + | 104 | - | - | Toxin |
| NHF38_RS09320 | 1945950..1946606 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| NHF38_RS09325 | 1946607..1946798 | - | 192 | WP_000457842.1 | YebW family protein | - |
| NHF38_RS09330 | 1946903..1947139 | - | 237 | WP_001295499.1 | YebV family protein | - |
| NHF38_RS09335 | 1947257..1948696 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T249141 NZ_CP099588:1945712-1945815 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT249141 NZ_CP099588:c1945853-1945582 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
