Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) slvAT/RES(toxin)
Location 1647904..1648634 Replicon chromosome
Accession NZ_CP099575
Organism Pseudomonas kermanshahensis strain F8

Toxin (Protein)


Gene name slvT Uniprot ID -
Locus tag NG836_RS07360 Protein ID WP_252826665.1
Coordinates 1647904..1648242 (-) Length 113 a.a.

Antitoxin (Protein)


Gene name slvA Uniprot ID -
Locus tag NG836_RS07365 Protein ID WP_252826666.1
Coordinates 1648239..1648634 (-) Length 132 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NG836_RS07340 (NG836_07340) 1642937..1644154 - 1218 WP_252826661.1 DUF3422 domain-containing protein -
NG836_RS07345 (NG836_07345) 1644322..1645752 - 1431 WP_252826662.1 aldehyde dehydrogenase family protein -
NG836_RS07350 (NG836_07350) 1645766..1647265 - 1500 WP_252826663.1 cytosine permease -
NG836_RS07355 (NG836_07355) 1647359..1647748 - 390 WP_252826664.1 nuclear transport factor 2 family protein -
NG836_RS07360 (NG836_07360) 1647904..1648242 - 339 WP_252826665.1 RES family NAD+ phosphorylase Toxin
NG836_RS07365 (NG836_07365) 1648239..1648634 - 396 WP_252826666.1 DUF2384 domain-containing protein Antitoxin
NG836_RS07370 (NG836_07370) 1648794..1649813 + 1020 WP_027594493.1 transporter -
NG836_RS07375 (NG836_07375) 1649904..1650524 + 621 WP_027594492.1 isochorismate family cysteine hydrolase YcaC -
NG836_RS07380 (NG836_07380) 1650763..1651581 + 819 WP_252826667.1 polyphosphate kinase 2 -
NG836_RS07385 (NG836_07385) 1651618..1652814 + 1197 WP_252826668.1 monovalent cation:proton antiporter-2 (CPA2) family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(11-110)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 113 a.a.        Molecular weight: 12146.92 Da        Isoelectric Point: 9.4424

>T249111 WP_252826665.1 NZ_CP099575:c1648242-1647904 [Pseudomonas kermanshahensis]
MKIIAYRNLACYRLHTPKWAIAPMSGAGAATQGGRANRKGLEALYLSLEPATAVAEFQQGSPFLPPGLLVSYSLTLDLVL
YTDQLPAHGSITVNDPRGDLPKDQSSWHRPKS

Download         Length: 339 bp

Antitoxin


Download         Length: 132 a.a.        Molecular weight: 14986.05 Da        Isoelectric Point: 5.6928

>AT249111 WP_252826666.1 NZ_CP099575:c1648634-1648239 [Pseudomonas kermanshahensis]
MASNAVLELHPTTFEGLMEALREVNRVMFSPERFLKVFSMDQQTFAARAHVHRNTVRNAPESEKIQAYIRDAVRVLRALT
DMGTEMTKAIFWFKNEPLSTFDYKTAEEVVSEGRTEQLIAFLQSWEAGAQG

Download         Length: 396 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References